miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 5' -53.7 NC_004065.1 + 26367 0.77 0.612157
Target:  5'- gCGACGGCGGCGggGAU--ACGGG-GCg -3'
miRNA:   3'- -GCUGCCGCUGCuaCUGcuUGUCCuCG- -5'
16175 5' -53.7 NC_004065.1 + 26608 0.69 0.959208
Target:  5'- gGuACGGCGGacaGAgucggagugcGGCGAcaGCGGGAGCa -3'
miRNA:   3'- gC-UGCCGCUg--CUa---------CUGCU--UGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 26954 0.68 0.974334
Target:  5'- cCGGCGGCcGCG---GCGGGCuccGGAGCu -3'
miRNA:   3'- -GCUGCCGcUGCuacUGCUUGu--CCUCG- -5'
16175 5' -53.7 NC_004065.1 + 27123 0.66 0.988038
Target:  5'- aCGAUGaCGACGAUGAC-AACGacGAGCc -3'
miRNA:   3'- -GCUGCcGCUGCUACUGcUUGUc-CUCG- -5'
16175 5' -53.7 NC_004065.1 + 28774 0.71 0.894684
Target:  5'- aGGCucaaGGUGACGGUGACGG--AGGAGa -3'
miRNA:   3'- gCUG----CCGCUGCUACUGCUugUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 28994 0.68 0.967988
Target:  5'- --cCGGCGGCGGUGGCGAggcgccgcgcgcacGCGGccucGAGUc -3'
miRNA:   3'- gcuGCCGCUGCUACUGCU--------------UGUC----CUCG- -5'
16175 5' -53.7 NC_004065.1 + 29586 0.71 0.881431
Target:  5'- aCGGCGGCcGCGGUGACcgcgguccuGCAGGAcuucGCg -3'
miRNA:   3'- -GCUGCCGcUGCUACUGcu-------UGUCCU----CG- -5'
16175 5' -53.7 NC_004065.1 + 29976 0.73 0.820461
Target:  5'- uGGCGGCGGCGgcGGCG-GCAGuGGUa -3'
miRNA:   3'- gCUGCCGCUGCuaCUGCuUGUCcUCG- -5'
16175 5' -53.7 NC_004065.1 + 30031 0.67 0.979062
Target:  5'- gCGGUGGUGACGGgcACGAACgAGGAcaGCg -3'
miRNA:   3'- -GCUGCCGCUGCUacUGCUUG-UCCU--CG- -5'
16175 5' -53.7 NC_004065.1 + 30075 0.73 0.803466
Target:  5'- uGAUGGCGGCGGUGgaaGCGAggccaGCGGuAGCg -3'
miRNA:   3'- gCUGCCGCUGCUAC---UGCU-----UGUCcUCG- -5'
16175 5' -53.7 NC_004065.1 + 30122 0.68 0.974334
Target:  5'- cCGGCGGCcuGGgGAgGGCGggUggcGGAGCg -3'
miRNA:   3'- -GCUGCCG--CUgCUaCUGCuuGu--CCUCG- -5'
16175 5' -53.7 NC_004065.1 + 30501 0.73 0.820461
Target:  5'- gCGACGGCGuugGAUGAUuc-CGGGGGCg -3'
miRNA:   3'- -GCUGCCGCug-CUACUGcuuGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 30669 0.68 0.962633
Target:  5'- aGACGuuCGACGcgGA-GAGCAaGGAGCu -3'
miRNA:   3'- gCUGCc-GCUGCuaCUgCUUGU-CCUCG- -5'
16175 5' -53.7 NC_004065.1 + 30792 0.68 0.974334
Target:  5'- cCGACGaUGACGAcUGACGGACGGacGGUa -3'
miRNA:   3'- -GCUGCcGCUGCU-ACUGCUUGUCc-UCG- -5'
16175 5' -53.7 NC_004065.1 + 31086 0.7 0.924508
Target:  5'- uGGCGGCGGCcuuggccgccaggGugGAGCGGGcaGGCa -3'
miRNA:   3'- gCUGCCGCUGcua----------CugCUUGUCC--UCG- -5'
16175 5' -53.7 NC_004065.1 + 31112 0.7 0.918567
Target:  5'- cCGGCGGCGcGCGAUcgagaGGCuGGACGGGAa- -3'
miRNA:   3'- -GCUGCCGC-UGCUA-----CUG-CUUGUCCUcg -5'
16175 5' -53.7 NC_004065.1 + 31297 0.71 0.900987
Target:  5'- aCGuCGGCGGCGucgucguucacAUGugGGACAG-AGCc -3'
miRNA:   3'- -GCuGCCGCUGC-----------UACugCUUGUCcUCG- -5'
16175 5' -53.7 NC_004065.1 + 31894 0.72 0.852452
Target:  5'- uGGCGGCGGCGAUGACcAGCuc--GCa -3'
miRNA:   3'- gCUGCCGCUGCUACUGcUUGuccuCG- -5'
16175 5' -53.7 NC_004065.1 + 33043 0.7 0.937461
Target:  5'- aCGACGGauaCGAgGAUG-CGGGCgccgccuugugucuGGGAGCg -3'
miRNA:   3'- -GCUGCC---GCUgCUACuGCUUG--------------UCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 33724 0.72 0.834399
Target:  5'- uGuAUGGCGACGGUGGCucggcccagcgccuuGCAGGAGUc -3'
miRNA:   3'- gC-UGCCGCUGCUACUGcu-------------UGUCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.