miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 5' -53.7 NC_004065.1 + 229653 0.67 0.981168
Target:  5'- cCGGcCGGCGGCaGUGGCagguGGGCGucGGGGCg -3'
miRNA:   3'- -GCU-GCCGCUGcUACUG----CUUGU--CCUCG- -5'
16175 5' -53.7 NC_004065.1 + 229347 0.66 0.992787
Target:  5'- gGGCGGuCGcuCGAccaGCGAGCGGGuGCu -3'
miRNA:   3'- gCUGCC-GCu-GCUac-UGCUUGUCCuCG- -5'
16175 5' -53.7 NC_004065.1 + 228850 0.66 0.992787
Target:  5'- cCGGCaGCGGCGccGACGAcACAauGGGGa -3'
miRNA:   3'- -GCUGcCGCUGCuaCUGCU-UGU--CCUCg -5'
16175 5' -53.7 NC_004065.1 + 227943 0.7 0.938858
Target:  5'- -uACGcGCGcaGCGcGUGAaaCGAACAGGAGCu -3'
miRNA:   3'- gcUGC-CGC--UGC-UACU--GCUUGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 227509 0.69 0.947655
Target:  5'- cCGACGGuUGACGGUGAgGAuuUAGuGGCa -3'
miRNA:   3'- -GCUGCC-GCUGCUACUgCUu-GUCcUCG- -5'
16175 5' -53.7 NC_004065.1 + 225173 0.66 0.992592
Target:  5'- cCGAgGGCGGCGGUGguggugguuuucuucGguuugcuacagucuaCGAGCGcGGGGCg -3'
miRNA:   3'- -GCUgCCGCUGCUAC---------------U---------------GCUUGU-CCUCG- -5'
16175 5' -53.7 NC_004065.1 + 223873 0.77 0.612157
Target:  5'- gCGA-GGCGAUcacggaGAUGACGAGUAGGAGCu -3'
miRNA:   3'- -GCUgCCGCUG------CUACUGCUUGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 215317 0.72 0.844721
Target:  5'- uGACGGCGugGAucUGAUGggUGGcGGUg -3'
miRNA:   3'- gCUGCCGCugCU--ACUGCuuGUCcUCG- -5'
16175 5' -53.7 NC_004065.1 + 213219 0.69 0.951722
Target:  5'- aCGACGGCGGCcGUGgACGAugGuucggucgucGGuAGCa -3'
miRNA:   3'- -GCUGCCGCUGcUAC-UGCUugU----------CC-UCG- -5'
16175 5' -53.7 NC_004065.1 + 212338 0.7 0.923979
Target:  5'- aCGACGGCcacGGCGAUGGCGcGACGGa--- -3'
miRNA:   3'- -GCUGCCG---CUGCUACUGC-UUGUCcucg -5'
16175 5' -53.7 NC_004065.1 + 211487 0.66 0.990647
Target:  5'- gCGAgccaGGCGccCGGUGACGAucccgugcacCAGGAGUc -3'
miRNA:   3'- -GCUg---CCGCu-GCUACUGCUu---------GUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 211418 0.68 0.975088
Target:  5'- aCGugGGCcugGGCGGUGACGAcaacaccaacgagGCcccuccgcuccucggAGGAGUc -3'
miRNA:   3'- -GCugCCG---CUGCUACUGCU-------------UG---------------UCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 211389 0.72 0.836808
Target:  5'- aGACGGCaGA-GGUGGCGGagGCGGGGGa -3'
miRNA:   3'- gCUGCCG-CUgCUACUGCU--UGUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 210143 0.8 0.441255
Target:  5'- uCGGCGGCGACGggGugGAuCAGGgucucuAGCa -3'
miRNA:   3'- -GCUGCCGCUGCuaCugCUuGUCC------UCG- -5'
16175 5' -53.7 NC_004065.1 + 208880 0.76 0.681647
Target:  5'- gGACGGUGcGCGGUGACGGACu-GAGUu -3'
miRNA:   3'- gCUGCCGC-UGCUACUGCUUGucCUCG- -5'
16175 5' -53.7 NC_004065.1 + 208023 0.67 0.986539
Target:  5'- uGcCGGCGGCGAUGACcgucGGCGuGGccguGGCg -3'
miRNA:   3'- gCuGCCGCUGCUACUGc---UUGU-CC----UCG- -5'
16175 5' -53.7 NC_004065.1 + 205431 0.79 0.486423
Target:  5'- cCGGCGGCGGCGGUGGCGGcgacgacacGCGcGGAccGCg -3'
miRNA:   3'- -GCUGCCGCUGCUACUGCU---------UGU-CCU--CG- -5'
16175 5' -53.7 NC_004065.1 + 203751 0.7 0.938395
Target:  5'- cCGACGaGuCGuCGGUGACGAACAuacgacgguccuuGGAGg -3'
miRNA:   3'- -GCUGC-C-GCuGCUACUGCUUGU-------------CCUCg -5'
16175 5' -53.7 NC_004065.1 + 203022 0.68 0.971149
Target:  5'- uGGCGGCGugGAggcuguuguugcugcUGcuggcguuguuuuugGCGAGCuccGGAGCc -3'
miRNA:   3'- gCUGCCGCugCU---------------AC---------------UGCUUGu--CCUCG- -5'
16175 5' -53.7 NC_004065.1 + 202585 0.68 0.965854
Target:  5'- -cGCGGaGACGcgGugGGACGGGcagaGGCu -3'
miRNA:   3'- gcUGCCgCUGCuaCugCUUGUCC----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.