miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 5' -53.7 NC_004065.1 + 61211 0.76 0.671773
Target:  5'- gCGGCgaGGgGAUGAUGGCGA--AGGAGCa -3'
miRNA:   3'- -GCUG--CCgCUGCUACUGCUugUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 152320 0.78 0.56279
Target:  5'- cCGGCGGgGACGAUGACGGcuucgaccucgaGgAGGAGa -3'
miRNA:   3'- -GCUGCCgCUGCUACUGCU------------UgUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 200833 0.78 0.56279
Target:  5'- gCGACGGgGACGAcccgGugGAguucggcgucgACGGGGGCg -3'
miRNA:   3'- -GCUGCCgCUGCUa---CugCU-----------UGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 127244 0.78 0.572596
Target:  5'- gCGGUGGCGGgGAUGAUGAGCGcGAGCg -3'
miRNA:   3'- -GCUGCCGCUgCUACUGCUUGUcCUCG- -5'
16175 5' -53.7 NC_004065.1 + 26367 0.77 0.612157
Target:  5'- gCGACGGCGGCGggGAU--ACGGG-GCg -3'
miRNA:   3'- -GCUGCCGCUGCuaCUGcuUGUCCuCG- -5'
16175 5' -53.7 NC_004065.1 + 96270 0.77 0.632049
Target:  5'- gGAUGGaCGGCGG-GGCGGcCAGGGGCg -3'
miRNA:   3'- gCUGCC-GCUGCUaCUGCUuGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 46887 0.76 0.641999
Target:  5'- uGACGGCGAgGAUGcACGGcuggaGGGGGCc -3'
miRNA:   3'- gCUGCCGCUgCUAC-UGCUug---UCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 75484 0.76 0.651941
Target:  5'- gCGAUGGCGGCGgcGAgGAuCAGGGcGCa -3'
miRNA:   3'- -GCUGCCGCUGCuaCUgCUuGUCCU-CG- -5'
16175 5' -53.7 NC_004065.1 + 168561 0.76 0.651941
Target:  5'- -aGCGGCGGCGgcGGCGA-CAGcGGGCg -3'
miRNA:   3'- gcUGCCGCUGCuaCUGCUuGUC-CUCG- -5'
16175 5' -53.7 NC_004065.1 + 62376 0.78 0.56279
Target:  5'- uGGCGGCGGgggUGGUGGCG-GCGGGGGUg -3'
miRNA:   3'- gCUGCCGCU---GCUACUGCuUGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 68240 0.78 0.533667
Target:  5'- uCGGCGGUGACGAgGACGGACcGGcugcuGGCg -3'
miRNA:   3'- -GCUGCCGCUGCUaCUGCUUGuCC-----UCG- -5'
16175 5' -53.7 NC_004065.1 + 148642 0.79 0.514552
Target:  5'- gCGGCaGCGAcuCGAUGGCGAACAGcAGCa -3'
miRNA:   3'- -GCUGcCGCU--GCUACUGCUUGUCcUCG- -5'
16175 5' -53.7 NC_004065.1 + 75779 0.82 0.350962
Target:  5'- gCGGaGGCGGCGGUcGGCGAGgGGGAGCg -3'
miRNA:   3'- -GCUgCCGCUGCUA-CUGCUUgUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 20728 0.82 0.366372
Target:  5'- cCGACGGCGACGAcGGCGAucACGGcGAGg -3'
miRNA:   3'- -GCUGCCGCUGCUaCUGCU--UGUC-CUCg -5'
16175 5' -53.7 NC_004065.1 + 48104 0.82 0.382241
Target:  5'- uGGCGGCGGCGGUGGCGGcgGCGGuGGGa -3'
miRNA:   3'- gCUGCCGCUGCUACUGCU--UGUC-CUCg -5'
16175 5' -53.7 NC_004065.1 + 109255 0.8 0.441255
Target:  5'- gCGuCGGUGACGAUGACGAcucGCGGcAGCa -3'
miRNA:   3'- -GCuGCCGCUGCUACUGCU---UGUCcUCG- -5'
16175 5' -53.7 NC_004065.1 + 145448 0.8 0.459044
Target:  5'- gCGAUGGagaGGCGAUGGCGu-CGGGGGCu -3'
miRNA:   3'- -GCUGCCg--CUGCUACUGCuuGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 74862 0.8 0.477209
Target:  5'- aGGCGGCGGUGGUaGACGGGCAGGucGCa -3'
miRNA:   3'- gCUGCCGCUGCUA-CUGCUUGUCCu-CG- -5'
16175 5' -53.7 NC_004065.1 + 91661 0.79 0.495721
Target:  5'- -aGCGGCG-CGAUGACGA-CGGGGGUc -3'
miRNA:   3'- gcUGCCGCuGCUACUGCUuGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 19042 0.79 0.513603
Target:  5'- aCGACGGCGGCGGuggcccacaucugUGACGAcgAGGAGg -3'
miRNA:   3'- -GCUGCCGCUGCU-------------ACUGCUugUCCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.