miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 5' -53.7 NC_004065.1 + 80796 0.92 0.103092
Target:  5'- aCGGCGGCGGCGgcGGCGGcaGCGGGAGCa -3'
miRNA:   3'- -GCUGCCGCUGCuaCUGCU--UGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 143297 0.76 0.651941
Target:  5'- aGGCGGCGuCGggGGCcgGGGCAGGAGg -3'
miRNA:   3'- gCUGCCGCuGCuaCUG--CUUGUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 171967 0.76 0.661868
Target:  5'- uGGCGGCGGCGgcGGCGG--AGGGGUc -3'
miRNA:   3'- gCUGCCGCUGCuaCUGCUugUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 105369 0.66 0.993163
Target:  5'- uGACGGCggacccggacucgcuGACGGccGGCGAGgAGGcGCu -3'
miRNA:   3'- gCUGCCG---------------CUGCUa-CUGCUUgUCCuCG- -5'
16175 5' -53.7 NC_004065.1 + 199214 0.8 0.459044
Target:  5'- gGACGcgcaccGCGACGGUGACGA-CAGGuGCa -3'
miRNA:   3'- gCUGC------CGCUGCUACUGCUuGUCCuCG- -5'
16175 5' -53.7 NC_004065.1 + 205431 0.79 0.486423
Target:  5'- cCGGCGGCGGCGGUGGCGGcgacgacacGCGcGGAccGCg -3'
miRNA:   3'- -GCUGCCGCUGCUACUGCU---------UGU-CCU--CG- -5'
16175 5' -53.7 NC_004065.1 + 115583 0.78 0.54332
Target:  5'- aCGGCGGUGGUGGUGGCG-GCGGGAGa -3'
miRNA:   3'- -GCUGCCGCUGCUACUGCuUGUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 144370 0.78 0.56279
Target:  5'- uCGACGGCGcugGCGGUGACGAuCuGGuGCc -3'
miRNA:   3'- -GCUGCCGC---UGCUACUGCUuGuCCuCG- -5'
16175 5' -53.7 NC_004065.1 + 4377 0.77 0.602229
Target:  5'- gCGACGGCGGCGgcGG-GAGCcGGAGUg -3'
miRNA:   3'- -GCUGCCGCUGCuaCUgCUUGuCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 116928 0.76 0.641999
Target:  5'- uGAgGGaGACGGUGGCGAACAacGGGGUg -3'
miRNA:   3'- gCUgCCgCUGCUACUGCUUGU--CCUCG- -5'
16175 5' -53.7 NC_004065.1 + 34602 0.77 0.622099
Target:  5'- aCGACGGCGAC----GCG-GCGGGAGCg -3'
miRNA:   3'- -GCUGCCGCUGcuacUGCuUGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 141651 0.77 0.592322
Target:  5'- gGGCGGUGGCGGUGccgcggccGCGGACGaGAGCg -3'
miRNA:   3'- gCUGCCGCUGCUAC--------UGCUUGUcCUCG- -5'
16175 5' -53.7 NC_004065.1 + 186585 0.82 0.358609
Target:  5'- uGGCuGCGACGAcGACGAugAGGAGUg -3'
miRNA:   3'- gCUGcCGCUGCUaCUGCUugUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 131038 0.77 0.622099
Target:  5'- uGugGGCGACccUGugGAGCAGGuGUu -3'
miRNA:   3'- gCugCCGCUGcuACugCUUGUCCuCG- -5'
16175 5' -53.7 NC_004065.1 + 70335 0.82 0.366372
Target:  5'- uCGGCGGCGACGgcGGCGA---GGAGCg -3'
miRNA:   3'- -GCUGCCGCUGCuaCUGCUuguCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 62342 0.78 0.572596
Target:  5'- aGACGGCGACGAucacUGACGcgucGCGGGuuccgAGCa -3'
miRNA:   3'- gCUGCCGCUGCU----ACUGCu---UGUCC-----UCG- -5'
16175 5' -53.7 NC_004065.1 + 108749 0.77 0.632049
Target:  5'- --cUGGCGAUGcgGACGAGCAaGAGCa -3'
miRNA:   3'- gcuGCCGCUGCuaCUGCUUGUcCUCG- -5'
16175 5' -53.7 NC_004065.1 + 102094 0.76 0.651941
Target:  5'- cCGACgcgGGCGGCGAUGGCcGGACcgAGGuGCg -3'
miRNA:   3'- -GCUG---CCGCUGCUACUG-CUUG--UCCuCG- -5'
16175 5' -53.7 NC_004065.1 + 210143 0.8 0.441255
Target:  5'- uCGGCGGCGACGggGugGAuCAGGgucucuAGCa -3'
miRNA:   3'- -GCUGCCGCUGCuaCugCUuGUCC------UCG- -5'
16175 5' -53.7 NC_004065.1 + 148871 0.78 0.54332
Target:  5'- aGGCGGCGGCGGggGGCGAGgGGGAc- -3'
miRNA:   3'- gCUGCCGCUGCUa-CUGCUUgUCCUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.