miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16176 5' -57.9 NC_004065.1 + 45885 0.66 0.915998
Target:  5'- aCCCGgcCUGGGggGCucCGUuCACCGCUc- -3'
miRNA:   3'- -GGGC--GAUCCuuCGu-GCG-GUGGUGGug -5'
16176 5' -57.9 NC_004065.1 + 33611 0.66 0.915998
Target:  5'- gCUGCUGcGGGccGGCAUgGCCaagGCCAUCGCg -3'
miRNA:   3'- gGGCGAU-CCU--UCGUG-CGG---UGGUGGUG- -5'
16176 5' -57.9 NC_004065.1 + 222430 0.66 0.915998
Target:  5'- gUCgGCaAGGAuAGCAgGUUACCGCCGg -3'
miRNA:   3'- -GGgCGaUCCU-UCGUgCGGUGGUGGUg -5'
16176 5' -57.9 NC_004065.1 + 228460 0.66 0.915998
Target:  5'- gUCGCUcGcAGGCACGCCgucagcuuACaCACCACg -3'
miRNA:   3'- gGGCGAuCcUUCGUGCGG--------UG-GUGGUG- -5'
16176 5' -57.9 NC_004065.1 + 130076 0.66 0.915998
Target:  5'- uUCGC-AGc-AGCA-GCCGCCGCCGCg -3'
miRNA:   3'- gGGCGaUCcuUCGUgCGGUGGUGGUG- -5'
16176 5' -57.9 NC_004065.1 + 211687 0.66 0.915998
Target:  5'- cCUCGCUuucGAGGC-CGCUACCAUCu- -3'
miRNA:   3'- -GGGCGAuc-CUUCGuGCGGUGGUGGug -5'
16176 5' -57.9 NC_004065.1 + 165141 0.66 0.915998
Target:  5'- gCCGCUcuucuccGAcGCGCGCCGCgGuCCGCa -3'
miRNA:   3'- gGGCGAuc-----CUuCGUGCGGUGgU-GGUG- -5'
16176 5' -57.9 NC_004065.1 + 179690 0.66 0.915998
Target:  5'- aUCGCggcGGuGGcCACGCgUGCCACCACu -3'
miRNA:   3'- gGGCGau-CCuUC-GUGCG-GUGGUGGUG- -5'
16176 5' -57.9 NC_004065.1 + 6630 0.66 0.915998
Target:  5'- cUCCGCggcugucggagGGGGAGaCGCGCaGCUACCGu -3'
miRNA:   3'- -GGGCGa----------UCCUUC-GUGCGgUGGUGGUg -5'
16176 5' -57.9 NC_004065.1 + 126319 0.66 0.910319
Target:  5'- gCCCGCcAGGc-GCucccCGCCGcCCACCGu -3'
miRNA:   3'- -GGGCGaUCCuuCGu---GCGGU-GGUGGUg -5'
16176 5' -57.9 NC_004065.1 + 194622 0.66 0.910319
Target:  5'- uCCaCGCgaggGGGGAGCuguUGCgCugCGCCAg -3'
miRNA:   3'- -GG-GCGa---UCCUUCGu--GCG-GugGUGGUg -5'
16176 5' -57.9 NC_004065.1 + 103540 0.66 0.910319
Target:  5'- -aCGC-GGGugcAGCGCGCCAaCAUCGCg -3'
miRNA:   3'- ggGCGaUCCu--UCGUGCGGUgGUGGUG- -5'
16176 5' -57.9 NC_004065.1 + 209262 0.66 0.910319
Target:  5'- -aCGCUAGGgcGauCGCCAUCACCc- -3'
miRNA:   3'- ggGCGAUCCuuCguGCGGUGGUGGug -5'
16176 5' -57.9 NC_004065.1 + 205492 0.66 0.910319
Target:  5'- cUCCGCUGccgucGucGC-UGCCGCCGCCAUc -3'
miRNA:   3'- -GGGCGAUc----CuuCGuGCGGUGGUGGUG- -5'
16176 5' -57.9 NC_004065.1 + 173378 0.66 0.910319
Target:  5'- aCCGaCggugaAGGGugccgcGGC-CGCUGCCACCGCa -3'
miRNA:   3'- gGGC-Ga----UCCU------UCGuGCGGUGGUGGUG- -5'
16176 5' -57.9 NC_004065.1 + 51820 0.66 0.910319
Target:  5'- gCCCGCaUGGGGAuGCGCcCCaACCuguCCAUc -3'
miRNA:   3'- -GGGCG-AUCCUU-CGUGcGG-UGGu--GGUG- -5'
16176 5' -57.9 NC_004065.1 + 4620 0.66 0.910319
Target:  5'- aCCCuucgagAGGGAGCggcaccaucaGCGCCAgcgcccCCGCCGCg -3'
miRNA:   3'- -GGGcga---UCCUUCG----------UGCGGU------GGUGGUG- -5'
16176 5' -57.9 NC_004065.1 + 510 0.66 0.908573
Target:  5'- gCCGUuuucUGGGAgucuacuacgcgguGGCGCGCCcCCugUGCg -3'
miRNA:   3'- gGGCG----AUCCU--------------UCGUGCGGuGGugGUG- -5'
16176 5' -57.9 NC_004065.1 + 21627 0.66 0.904421
Target:  5'- gCCGCUcuGGGAGGCccaGCCGauaAUCACg -3'
miRNA:   3'- gGGCGA--UCCUUCGug-CGGUgg-UGGUG- -5'
16176 5' -57.9 NC_004065.1 + 159902 0.66 0.904421
Target:  5'- uUCUGUc--GAucGGCGcCGCCGCCGCCGCu -3'
miRNA:   3'- -GGGCGaucCU--UCGU-GCGGUGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.