miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16178 3' -52.4 NC_004065.1 + 189000 0.66 0.995577
Target:  5'- gCGGCUUCgACGGAcucACGGAGgucaACgUGUUCg -3'
miRNA:   3'- -GCCGGAG-UGUCU---UGUCUCa---UG-GCAAG- -5'
16178 3' -52.4 NC_004065.1 + 25147 0.66 0.995577
Target:  5'- aGGCCucUCACAGuuccuccCGGAGUcCCGcUCg -3'
miRNA:   3'- gCCGG--AGUGUCuu-----GUCUCAuGGCaAG- -5'
16178 3' -52.4 NC_004065.1 + 83534 0.66 0.994869
Target:  5'- uGGCgCUCAgGGuGCGGAuGUGCUGcUUCu -3'
miRNA:   3'- gCCG-GAGUgUCuUGUCU-CAUGGC-AAG- -5'
16178 3' -52.4 NC_004065.1 + 160085 0.66 0.994869
Target:  5'- -aGCCUCAC-GAGCGaGGUGCCGc-- -3'
miRNA:   3'- gcCGGAGUGuCUUGUcUCAUGGCaag -5'
16178 3' -52.4 NC_004065.1 + 108838 0.66 0.994071
Target:  5'- aCGGCCUCGguGAGCcuGGAcGUGUCGUc- -3'
miRNA:   3'- -GCCGGAGUguCUUG--UCU-CAUGGCAag -5'
16178 3' -52.4 NC_004065.1 + 182652 0.66 0.994071
Target:  5'- gCGGCCgCGCuGGACuguGGAGUACgGUc- -3'
miRNA:   3'- -GCCGGaGUGuCUUG---UCUCAUGgCAag -5'
16178 3' -52.4 NC_004065.1 + 74938 0.66 0.993177
Target:  5'- uGGCCUggUugGGAAUGGGGaUGCCGa-- -3'
miRNA:   3'- gCCGGA--GugUCUUGUCUC-AUGGCaag -5'
16178 3' -52.4 NC_004065.1 + 145282 0.66 0.993177
Target:  5'- cCGaGCCUCGCcgAGAcgACGGGGUaacgucGCCGcUUCg -3'
miRNA:   3'- -GC-CGGAGUG--UCU--UGUCUCA------UGGC-AAG- -5'
16178 3' -52.4 NC_004065.1 + 92439 0.66 0.992178
Target:  5'- uGGCCaacCGCGuGACGGAGUACCu--- -3'
miRNA:   3'- gCCGGa--GUGUcUUGUCUCAUGGcaag -5'
16178 3' -52.4 NC_004065.1 + 29294 0.66 0.992178
Target:  5'- aGGaCCUCGCGGAagACGGGGU-CCa--- -3'
miRNA:   3'- gCC-GGAGUGUCU--UGUCUCAuGGcaag -5'
16178 3' -52.4 NC_004065.1 + 208407 0.66 0.991067
Target:  5'- gGGCCUCcCAGAGCGgcuacGAGUugCa--- -3'
miRNA:   3'- gCCGGAGuGUCUUGU-----CUCAugGcaag -5'
16178 3' -52.4 NC_004065.1 + 143063 0.67 0.989834
Target:  5'- aCGGCCUCAUcaaggAGAACucGGAGguccucuccACCGUcuUCg -3'
miRNA:   3'- -GCCGGAGUG-----UCUUG--UCUCa--------UGGCA--AG- -5'
16178 3' -52.4 NC_004065.1 + 183313 0.67 0.989834
Target:  5'- gCGaCCUCGCGGAACAGGGauuUCGUc- -3'
miRNA:   3'- -GCcGGAGUGUCUUGUCUCau-GGCAag -5'
16178 3' -52.4 NC_004065.1 + 126975 0.67 0.988472
Target:  5'- -cGCCUCGaAGcuCAGGuuGUACCGUUCg -3'
miRNA:   3'- gcCGGAGUgUCuuGUCU--CAUGGCAAG- -5'
16178 3' -52.4 NC_004065.1 + 194109 0.67 0.986973
Target:  5'- aGGCgUCGCAGAcccGCGG-GUAUCGg-- -3'
miRNA:   3'- gCCGgAGUGUCU---UGUCuCAUGGCaag -5'
16178 3' -52.4 NC_004065.1 + 65190 0.67 0.986973
Target:  5'- gCGGCCaUCGCgguuuccuccucGGAAacggcCAGAGUGCCGg-- -3'
miRNA:   3'- -GCCGG-AGUG------------UCUU-----GUCUCAUGGCaag -5'
16178 3' -52.4 NC_004065.1 + 159280 0.67 0.986973
Target:  5'- uGGCC--GCcGAGCGGAuGaUGCCGUUCa -3'
miRNA:   3'- gCCGGagUGuCUUGUCU-C-AUGGCAAG- -5'
16178 3' -52.4 NC_004065.1 + 95894 0.67 0.986973
Target:  5'- uCGuGCCguagaUCGCAGAGguGAGUGCgGUg- -3'
miRNA:   3'- -GC-CGG-----AGUGUCUUguCUCAUGgCAag -5'
16178 3' -52.4 NC_004065.1 + 69391 0.67 0.986973
Target:  5'- aCGGCgCUgGCGGAACAGc-UGCCGa-- -3'
miRNA:   3'- -GCCG-GAgUGUCUUGUCucAUGGCaag -5'
16178 3' -52.4 NC_004065.1 + 208910 0.67 0.985328
Target:  5'- aCGaCCUCauacACGGAACGGAggGUGCCGaUCg -3'
miRNA:   3'- -GCcGGAG----UGUCUUGUCU--CAUGGCaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.