miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16178 5' -56.4 NC_004065.1 + 227786 0.66 0.941844
Target:  5'- cCGAUGAGGagaCCGUUCUCaGGCa-- -3'
miRNA:   3'- uGCUACUCCagaGGCAAGAG-CCGcca -5'
16178 5' -56.4 NC_004065.1 + 192509 0.67 0.93729
Target:  5'- cACGcUGAGGUCcaCCG--CUUGGCGGa -3'
miRNA:   3'- -UGCuACUCCAGa-GGCaaGAGCCGCCa -5'
16178 5' -56.4 NC_004065.1 + 78796 0.67 0.93729
Target:  5'- gACGcucGAGGUCUuccCCGcgC-CGGCGGUa -3'
miRNA:   3'- -UGCua-CUCCAGA---GGCaaGaGCCGCCA- -5'
16178 5' -56.4 NC_004065.1 + 131232 0.67 0.922297
Target:  5'- uCGAUGucgGGGUCUCgGUcgUCUCcguGGCGGc -3'
miRNA:   3'- uGCUAC---UCCAGAGgCA--AGAG---CCGCCa -5'
16178 5' -56.4 NC_004065.1 + 213437 0.67 0.911188
Target:  5'- aGCGGUaGAGGUaucgggCUCCGUagUCUCGGgcugaGGUg -3'
miRNA:   3'- -UGCUA-CUCCA------GAGGCA--AGAGCCg----CCA- -5'
16178 5' -56.4 NC_004065.1 + 128910 0.68 0.905302
Target:  5'- cGCGAgggcGAGGgCUCCGUUUaCGGCGc- -3'
miRNA:   3'- -UGCUa---CUCCaGAGGCAAGaGCCGCca -5'
16178 5' -56.4 NC_004065.1 + 176533 0.68 0.905302
Target:  5'- gAUGAaGAGGUCaccaucuucCCGgagagCUCGGCGGUc -3'
miRNA:   3'- -UGCUaCUCCAGa--------GGCaa---GAGCCGCCA- -5'
16178 5' -56.4 NC_004065.1 + 170217 0.68 0.879603
Target:  5'- cACGAgGAGGaucUCUCCugUCUCGGCGa- -3'
miRNA:   3'- -UGCUaCUCC---AGAGGcaAGAGCCGCca -5'
16178 5' -56.4 NC_004065.1 + 182667 0.69 0.850628
Target:  5'- aGCGAgGAGcUCUgCGUUCUaCGGUGGUc -3'
miRNA:   3'- -UGCUaCUCcAGAgGCAAGA-GCCGCCA- -5'
16178 5' -56.4 NC_004065.1 + 81974 0.69 0.842909
Target:  5'- gAUGAUGAuGUCgucgaCGUUUUCGGCGGc -3'
miRNA:   3'- -UGCUACUcCAGag---GCAAGAGCCGCCa -5'
16178 5' -56.4 NC_004065.1 + 83996 0.69 0.835011
Target:  5'- cGCGAUGAcGUCgcCCGccagCUUGGCGGUg -3'
miRNA:   3'- -UGCUACUcCAGa-GGCaa--GAGCCGCCA- -5'
16178 5' -56.4 NC_004065.1 + 195314 0.7 0.818706
Target:  5'- aACGAgaagcucGAGGUCUUCGUgcucCUgGGCGGc -3'
miRNA:   3'- -UGCUa------CUCCAGAGGCAa---GAgCCGCCa -5'
16178 5' -56.4 NC_004065.1 + 168331 0.73 0.67081
Target:  5'- gAUGAUGAagaggguucGGUCUCCGaUCcCGGUGGUa -3'
miRNA:   3'- -UGCUACU---------CCAGAGGCaAGaGCCGCCA- -5'
16178 5' -56.4 NC_004065.1 + 120530 0.74 0.570379
Target:  5'- gACGAUGucgaGGGUCUCCGgugugccggCGGCGGUc -3'
miRNA:   3'- -UGCUAC----UCCAGAGGCaaga-----GCCGCCA- -5'
16178 5' -56.4 NC_004065.1 + 177332 1.06 0.006552
Target:  5'- gACGAUGAGGUCUCCGUUCUCGGCGGUc -3'
miRNA:   3'- -UGCUACUCCAGAGGCAAGAGCCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.