miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 3' -53.1 NC_004065.1 + 31051 0.66 0.989537
Target:  5'- cGCCAGG----AGUCugUUGA-CGGCGu -3'
miRNA:   3'- -UGGUCCacaaUCAGugAACUcGCCGU- -5'
16179 3' -53.1 NC_004065.1 + 144197 0.66 0.987537
Target:  5'- gGCCAGGgcucgauaUCGCUUGuuGCGGCGc -3'
miRNA:   3'- -UGGUCCacaauc--AGUGAACu-CGCCGU- -5'
16179 3' -53.1 NC_004065.1 + 148613 0.66 0.983055
Target:  5'- cACCAGGUGcuccagcGUCugUcUGgacAGCGGCAg -3'
miRNA:   3'- -UGGUCCACaau----CAGugA-AC---UCGCCGU- -5'
16179 3' -53.1 NC_004065.1 + 33244 0.67 0.978851
Target:  5'- gUCuGGUGUUcGUCGCUgaGGUGGCGg -3'
miRNA:   3'- uGGuCCACAAuCAGUGAacUCGCCGU- -5'
16179 3' -53.1 NC_004065.1 + 218946 0.67 0.97648
Target:  5'- aACCAGGUGUc-GUgAC--GAGCGGUg -3'
miRNA:   3'- -UGGUCCACAauCAgUGaaCUCGCCGu -5'
16179 3' -53.1 NC_004065.1 + 208663 0.68 0.96165
Target:  5'- gGCCAGGUGUUGGUCgACUacAGCa--- -3'
miRNA:   3'- -UGGUCCACAAUCAG-UGAacUCGccgu -5'
16179 3' -53.1 NC_004065.1 + 16029 0.68 0.950154
Target:  5'- gGCCGGGUGUUggcAGUUcauaGCUccAGCGGCc -3'
miRNA:   3'- -UGGUCCACAA---UCAG----UGAacUCGCCGu -5'
16179 3' -53.1 NC_004065.1 + 137182 0.68 0.950154
Target:  5'- cACCuAGGUGcUGGUUACggggGAGgGGCu -3'
miRNA:   3'- -UGG-UCCACaAUCAGUGaa--CUCgCCGu -5'
16179 3' -53.1 NC_004065.1 + 182480 0.7 0.920816
Target:  5'- cGCUGGGUGggcggUGGUCccaaUUGGGCGGUg -3'
miRNA:   3'- -UGGUCCACa----AUCAGug--AACUCGCCGu -5'
16179 3' -53.1 NC_004065.1 + 108931 0.7 0.915085
Target:  5'- gACCAGGUGacggUGGUCcagaGCUcggGAGUGGUg -3'
miRNA:   3'- -UGGUCCACa---AUCAG----UGAa--CUCGCCGu -5'
16179 3' -53.1 NC_004065.1 + 151536 0.72 0.82004
Target:  5'- gGCCGggcGGUGUcGGgcgCGCUUGAcGCGGCGc -3'
miRNA:   3'- -UGGU---CCACAaUCa--GUGAACU-CGCCGU- -5'
16179 3' -53.1 NC_004065.1 + 177489 1.08 0.00822
Target:  5'- cACCAGGUGUUAGUCACUUGAGCGGCAc -3'
miRNA:   3'- -UGGUCCACAAUCAGUGAACUCGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.