miRNA display CGI


Results 1 - 20 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 117717 0.66 0.723611
Target:  5'- cCCGUCACCcuCGCGUCucucGCGcGCGCaCCg -3'
miRNA:   3'- uGGCGGUGGc-GCGCGGu---UGU-CGCG-GG- -5'
16179 5' -63.1 NC_004065.1 + 64821 0.66 0.723611
Target:  5'- -gCGCCACaucuCGCcCGCCAAC-GUGCUCu -3'
miRNA:   3'- ugGCGGUG----GCGcGCGGUUGuCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 214596 0.66 0.723611
Target:  5'- aGCCGCCucCCGUGUaauugaGCCGACcgccGGCGUauCCu -3'
miRNA:   3'- -UGGCGGu-GGCGCG------CGGUUG----UCGCG--GG- -5'
16179 5' -63.1 NC_004065.1 + 100145 0.66 0.723611
Target:  5'- uCCGCCGCaGCGCGCgGcACAG-GUCg -3'
miRNA:   3'- uGGCGGUGgCGCGCGgU-UGUCgCGGg -5'
16179 5' -63.1 NC_004065.1 + 60966 0.66 0.723611
Target:  5'- gACgGUCuugaAUCGCGCGUacggccGCAGCGCCUu -3'
miRNA:   3'- -UGgCGG----UGGCGCGCGgu----UGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 124997 0.66 0.723611
Target:  5'- gUCGUgCAgCGCGCucacguacGCCAGCAGCgGCUCg -3'
miRNA:   3'- uGGCG-GUgGCGCG--------CGGUUGUCG-CGGG- -5'
16179 5' -63.1 NC_004065.1 + 221996 0.66 0.723611
Target:  5'- cCCGaagacgaUACCGCGUGggaCuGCAGCGCCUc -3'
miRNA:   3'- uGGCg------GUGGCGCGCg--GuUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 103526 0.66 0.723611
Target:  5'- cGCgGCgCAUgGCGaCGCgGguGCAGCGCgCCa -3'
miRNA:   3'- -UGgCG-GUGgCGC-GCGgU--UGUCGCG-GG- -5'
16179 5' -63.1 NC_004065.1 + 221282 0.66 0.723611
Target:  5'- cGCCGCCACCaCG-GCCucCGGuCGUCa -3'
miRNA:   3'- -UGGCGGUGGcGCgCGGuuGUC-GCGGg -5'
16179 5' -63.1 NC_004065.1 + 87532 0.66 0.722693
Target:  5'- -aCGCgCAgCGCGUGCCAGacgggguUAGCcGCCUg -3'
miRNA:   3'- ugGCG-GUgGCGCGCGGUU-------GUCG-CGGG- -5'
16179 5' -63.1 NC_004065.1 + 141402 0.66 0.722693
Target:  5'- -gCGCCAUCGagcCGCGCaAGCAGUuccccaaGCCCu -3'
miRNA:   3'- ugGCGGUGGC---GCGCGgUUGUCG-------CGGG- -5'
16179 5' -63.1 NC_004065.1 + 109888 0.66 0.722693
Target:  5'- cGCCGCgGCCGCGuCGgggggucCCGGCu-CGUCCg -3'
miRNA:   3'- -UGGCGgUGGCGC-GC-------GGUUGucGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 59568 0.66 0.722693
Target:  5'- uCUGCgGCgGCagcgaagGCGCCuccgGCGGCGUCCu -3'
miRNA:   3'- uGGCGgUGgCG-------CGCGGu---UGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 135369 0.66 0.720853
Target:  5'- cGCgGCgaguucuucagggaCGgUGaCGCGCCGGCcGCGCCCg -3'
miRNA:   3'- -UGgCG--------------GUgGC-GCGCGGUUGuCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 36517 0.66 0.718089
Target:  5'- --aGCCAgCCGCGacacgaccuucauguCGCUAACgggcauccguccGGCGCCCg -3'
miRNA:   3'- uggCGGU-GGCGC---------------GCGGUUG------------UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 66618 0.66 0.714394
Target:  5'- uCCGgaGCCGCGgGCU-GCGGCGCUg -3'
miRNA:   3'- uGGCggUGGCGCgCGGuUGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 125362 0.66 0.714394
Target:  5'- gACCcuCCGgCGCGCGCaccuugguCAGCuccAGCGCCUg -3'
miRNA:   3'- -UGGc-GGUgGCGCGCG--------GUUG---UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 62030 0.66 0.714394
Target:  5'- gUCGCCAUCGCuGCugcuGCUggUGGUGCCg -3'
miRNA:   3'- uGGCGGUGGCG-CG----CGGuuGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 163291 0.66 0.714394
Target:  5'- -aCGCCGCCGgG-GuCCGACggcacgGGCGCCa -3'
miRNA:   3'- ugGCGGUGGCgCgC-GGUUG------UCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 110186 0.66 0.714394
Target:  5'- uGCgGCgGCCGCgacGCGCCGc---CGCCCg -3'
miRNA:   3'- -UGgCGgUGGCG---CGCGGUugucGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.