miRNA display CGI


Results 1 - 20 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 97013 0.66 0.676993
Target:  5'- uGCUGCCGCUGCuGCuacuGUCGugGGUGCUg -3'
miRNA:   3'- -UGGCGGUGGCG-CG----CGGUugUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 79233 0.66 0.695786
Target:  5'- cAUCGCgCACCaGCGgaucaCGCUGACGGCGCg- -3'
miRNA:   3'- -UGGCG-GUGG-CGC-----GCGGUUGUCGCGgg -5'
16179 5' -63.1 NC_004065.1 + 75675 0.66 0.67605
Target:  5'- --gGCgGCCGCGgGCUgauucuuGGCcGCGCCCc -3'
miRNA:   3'- uggCGgUGGCGCgCGG-------UUGuCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 117717 0.66 0.723611
Target:  5'- cCCGUCACCcuCGCGUCucucGCGcGCGCaCCg -3'
miRNA:   3'- uGGCGGUGGc-GCGCGGu---UGU-CGCG-GG- -5'
16179 5' -63.1 NC_004065.1 + 127108 0.66 0.690165
Target:  5'- uCCGUCGCCGuCcaguucucccccaucGCGgCGGCGGCGCUa -3'
miRNA:   3'- uGGCGGUGGC-G---------------CGCgGUUGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 106597 0.66 0.67605
Target:  5'- cCCGUCucuccggACgGUGCGCCGACuccaucAGgGCCCu -3'
miRNA:   3'- uGGCGG-------UGgCGCGCGGUUG------UCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 122505 0.66 0.686409
Target:  5'- gGCgGUCGCCGCGCGCaccuccucguGCgAGCGgUCg -3'
miRNA:   3'- -UGgCGGUGGCGCGCGgu--------UG-UCGCgGG- -5'
16179 5' -63.1 NC_004065.1 + 61460 0.66 0.686409
Target:  5'- cCCGCU-CCGUgaugcgcuGCGCC-AUGGCGUCCa -3'
miRNA:   3'- uGGCGGuGGCG--------CGCGGuUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 30000 0.66 0.676993
Target:  5'- uAUCGCCagagGCUGCGCGaCCGucacCGGCGCg- -3'
miRNA:   3'- -UGGCGG----UGGCGCGC-GGUu---GUCGCGgg -5'
16179 5' -63.1 NC_004065.1 + 63099 0.66 0.686409
Target:  5'- gUCGCUGuaGCGUGCCGagACAGCcgguggacgGCCCg -3'
miRNA:   3'- uGGCGGUggCGCGCGGU--UGUCG---------CGGG- -5'
16179 5' -63.1 NC_004065.1 + 87540 0.66 0.686409
Target:  5'- gACCGCCACCcccuggcuCGCGUCcACcGC-CCCa -3'
miRNA:   3'- -UGGCGGUGGc-------GCGCGGuUGuCGcGGG- -5'
16179 5' -63.1 NC_004065.1 + 91262 0.66 0.686409
Target:  5'- -aCGCCAUCGacCGCGCCGACcuGCaCCUu -3'
miRNA:   3'- ugGCGGUGGC--GCGCGGUUGu-CGcGGG- -5'
16179 5' -63.1 NC_004065.1 + 142422 0.66 0.695786
Target:  5'- uUCGCCuGCCgGCGCGCCGGCuccucAGgGUCa -3'
miRNA:   3'- uGGCGG-UGG-CGCGCGGUUG-----UCgCGGg -5'
16179 5' -63.1 NC_004065.1 + 63712 0.66 0.695786
Target:  5'- gGCCGUgAUCGCcugguggucgGCGCCGuagACAuaGCCCu -3'
miRNA:   3'- -UGGCGgUGGCG----------CGCGGU---UGUcgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 30585 0.66 0.680764
Target:  5'- uCCGCCGCgGCgaGCGCCucguccgcguuccgaGGCAGCGaCgCg -3'
miRNA:   3'- uGGCGGUGgCG--CGCGG---------------UUGUCGC-GgG- -5'
16179 5' -63.1 NC_004065.1 + 91996 0.66 0.680764
Target:  5'- aACCGCCccgaagggcuCCGUGCGCCGcaaucgcagaggaccGCGG-GCUCu -3'
miRNA:   3'- -UGGCGGu---------GGCGCGCGGU---------------UGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 125163 0.66 0.680764
Target:  5'- aGCCG-CACCaugucguagcuguugGCGaaCGCCAGCAG-GCCCc -3'
miRNA:   3'- -UGGCgGUGG---------------CGC--GCGGUUGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 130160 0.66 0.676993
Target:  5'- gGCCGUCGCUaucCGCGaCCc-CGGCGCCa -3'
miRNA:   3'- -UGGCGGUGGc--GCGC-GGuuGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 201354 0.66 0.695786
Target:  5'- -aCGCgaACUGCuGCGCgAGCuGCGCCUc -3'
miRNA:   3'- ugGCGg-UGGCG-CGCGgUUGuCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 40889 0.66 0.695786
Target:  5'- aGCCcaugaUCACCGCacGCGCCGGCuugucGgGCCCu -3'
miRNA:   3'- -UGGc----GGUGGCG--CGCGGUUGu----CgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.