miRNA display CGI


Results 21 - 40 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 201354 0.66 0.695786
Target:  5'- -aCGCgaACUGCuGCGCgAGCuGCGCCUc -3'
miRNA:   3'- ugGCGg-UGGCG-CGCGgUUGuCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 202005 0.66 0.705116
Target:  5'- gGCCGCCAaCGCgaugGCGuCCuccuCGGCGCUg -3'
miRNA:   3'- -UGGCGGUgGCG----CGC-GGuu--GUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 112967 0.66 0.690165
Target:  5'- cGCCGCgGCCGaacguucgcugaagGCGCgguGCAGCGUCUc -3'
miRNA:   3'- -UGGCGgUGGCg-------------CGCGgu-UGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 62030 0.66 0.714394
Target:  5'- gUCGCCAUCGCuGCugcuGCUggUGGUGCCg -3'
miRNA:   3'- uGGCGGUGGCG-CG----CGGuuGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 106597 0.66 0.67605
Target:  5'- cCCGUCucuccggACgGUGCGCCGACuccaucAGgGCCCu -3'
miRNA:   3'- uGGCGG-------UGgCGCGCGGUUG------UCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 117717 0.66 0.723611
Target:  5'- cCCGUCACCcuCGCGUCucucGCGcGCGCaCCg -3'
miRNA:   3'- uGGCGGUGGc-GCGCGGu---UGU-CGCG-GG- -5'
16179 5' -63.1 NC_004065.1 + 79233 0.66 0.695786
Target:  5'- cAUCGCgCACCaGCGgaucaCGCUGACGGCGCg- -3'
miRNA:   3'- -UGGCG-GUGG-CGC-----GCGGUUGUCGCGgg -5'
16179 5' -63.1 NC_004065.1 + 63712 0.66 0.695786
Target:  5'- gGCCGUgAUCGCcugguggucgGCGCCGuagACAuaGCCCu -3'
miRNA:   3'- -UGGCGgUGGCG----------CGCGGU---UGUcgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 87540 0.66 0.686409
Target:  5'- gACCGCCACCcccuggcuCGCGUCcACcGC-CCCa -3'
miRNA:   3'- -UGGCGGUGGc-------GCGCGGuUGuCGcGGG- -5'
16179 5' -63.1 NC_004065.1 + 142422 0.66 0.695786
Target:  5'- uUCGCCuGCCgGCGCGCCGGCuccucAGgGUCa -3'
miRNA:   3'- uGGCGG-UGG-CGCGCGGUUG-----UCgCGGg -5'
16179 5' -63.1 NC_004065.1 + 21735 0.66 0.714394
Target:  5'- uUCGCUGCCGCuaucuugguaCGUCGuCAGCGCCUc -3'
miRNA:   3'- uGGCGGUGGCGc---------GCGGUuGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 229634 0.66 0.714394
Target:  5'- cACCGUC-UCGUGCGCCAucccggccggcgGCAGUGgCa -3'
miRNA:   3'- -UGGCGGuGGCGCGCGGU------------UGUCGCgGg -5'
16179 5' -63.1 NC_004065.1 + 143226 0.66 0.714394
Target:  5'- gGCCGCguuCGCCGCGCccgucuucGCUAACccGCGUCa -3'
miRNA:   3'- -UGGCG---GUGGCGCG--------CGGUUGu-CGCGGg -5'
16179 5' -63.1 NC_004065.1 + 63099 0.66 0.686409
Target:  5'- gUCGCUGuaGCGUGCCGagACAGCcgguggacgGCCCg -3'
miRNA:   3'- uGGCGGUggCGCGCGGU--UGUCG---------CGGG- -5'
16179 5' -63.1 NC_004065.1 + 30585 0.66 0.680764
Target:  5'- uCCGCCGCgGCgaGCGCCucguccgcguuccgaGGCAGCGaCgCg -3'
miRNA:   3'- uGGCGGUGgCG--CGCGG---------------UUGUCGC-GgG- -5'
16179 5' -63.1 NC_004065.1 + 154143 0.66 0.705116
Target:  5'- gAUCGCC-CCGgGCGgUGGCGGCGgCg -3'
miRNA:   3'- -UGGCGGuGGCgCGCgGUUGUCGCgGg -5'
16179 5' -63.1 NC_004065.1 + 118335 0.66 0.705116
Target:  5'- gACCGCCGaCGUccaugGCGUCGGCgucGGCGUCUg -3'
miRNA:   3'- -UGGCGGUgGCG-----CGCGGUUG---UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 126161 0.66 0.714394
Target:  5'- uCCGCCAUgaucgcguggugCGCGauCGCCGucACGGCGUUCu -3'
miRNA:   3'- uGGCGGUG------------GCGC--GCGGU--UGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 36517 0.66 0.718089
Target:  5'- --aGCCAgCCGCGacacgaccuucauguCGCUAACgggcauccguccGGCGCCCg -3'
miRNA:   3'- uggCGGU-GGCGC---------------GCGGUUG------------UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 122505 0.66 0.686409
Target:  5'- gGCgGUCGCCGCGCGCaccuccucguGCgAGCGgUCg -3'
miRNA:   3'- -UGgCGGUGGCGCGCGgu--------UG-UCGCgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.