miRNA display CGI


Results 41 - 60 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 110020 0.66 0.67605
Target:  5'- aGCCGgCACCGCcCGCCGuguucuuccacccGCucggcGCGCuCCa -3'
miRNA:   3'- -UGGCgGUGGCGcGCGGU-------------UGu----CGCG-GG- -5'
16179 5' -63.1 NC_004065.1 + 110186 0.66 0.714394
Target:  5'- uGCgGCgGCCGCgacGCGCCGc---CGCCCg -3'
miRNA:   3'- -UGgCGgUGGCG---CGCGGUugucGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 66618 0.66 0.714394
Target:  5'- uCCGgaGCCGCGgGCU-GCGGCGCUg -3'
miRNA:   3'- uGGCggUGGCGCgCGGuUGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 126161 0.66 0.714394
Target:  5'- uCCGCCAUgaucgcguggugCGCGauCGCCGucACGGCGUUCu -3'
miRNA:   3'- uGGCGGUG------------GCGC--GCGGU--UGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 28460 0.66 0.680764
Target:  5'- uAUCGCUgaucaGCgGCGaguuguggcgucugGCCGACAGCGCCg -3'
miRNA:   3'- -UGGCGG-----UGgCGCg-------------CGGUUGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 109888 0.66 0.722693
Target:  5'- cGCCGCgGCCGCGuCGgggggucCCGGCu-CGUCCg -3'
miRNA:   3'- -UGGCGgUGGCGC-GC-------GGUUGucGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 154143 0.66 0.705116
Target:  5'- gAUCGCC-CCGgGCGgUGGCGGCGgCg -3'
miRNA:   3'- -UGGCGGuGGCgCGCgGUUGUCGCgGg -5'
16179 5' -63.1 NC_004065.1 + 129616 0.66 0.676993
Target:  5'- cGCgGUCAgCGCGgagaacuggaccCGCCGGCuGCuGCCCa -3'
miRNA:   3'- -UGgCGGUgGCGC------------GCGGUUGuCG-CGGG- -5'
16179 5' -63.1 NC_004065.1 + 209596 0.66 0.714394
Target:  5'- uGCCGUUAUCGUacacCGUCAACAGCGgCa -3'
miRNA:   3'- -UGGCGGUGGCGc---GCGGUUGUCGCgGg -5'
16179 5' -63.1 NC_004065.1 + 118335 0.66 0.705116
Target:  5'- gACCGCCGaCGUccaugGCGUCGGCgucGGCGUCUg -3'
miRNA:   3'- -UGGCGGUgGCG-----CGCGGUUG---UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 117717 0.66 0.723611
Target:  5'- cCCGUCACCcuCGCGUCucucGCGcGCGCaCCg -3'
miRNA:   3'- uGGCGGUGGc-GCGCGGu---UGU-CGCG-GG- -5'
16179 5' -63.1 NC_004065.1 + 100145 0.66 0.723611
Target:  5'- uCCGCCGCaGCGCGCgGcACAG-GUCg -3'
miRNA:   3'- uGGCGGUGgCGCGCGgU-UGUCgCGGg -5'
16179 5' -63.1 NC_004065.1 + 106597 0.66 0.67605
Target:  5'- cCCGUCucuccggACgGUGCGCCGACuccaucAGgGCCCu -3'
miRNA:   3'- uGGCGG-------UGgCGCGCGGUUG------UCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 60966 0.66 0.723611
Target:  5'- gACgGUCuugaAUCGCGCGUacggccGCAGCGCCUu -3'
miRNA:   3'- -UGgCGG----UGGCGCGCGgu----UGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 21735 0.66 0.714394
Target:  5'- uUCGCUGCCGCuaucuugguaCGUCGuCAGCGCCUc -3'
miRNA:   3'- uGGCGGUGGCGc---------GCGGUuGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 87540 0.66 0.686409
Target:  5'- gACCGCCACCcccuggcuCGCGUCcACcGC-CCCa -3'
miRNA:   3'- -UGGCGGUGGc-------GCGCGGuUGuCGcGGG- -5'
16179 5' -63.1 NC_004065.1 + 63099 0.66 0.686409
Target:  5'- gUCGCUGuaGCGUGCCGagACAGCcgguggacgGCCCg -3'
miRNA:   3'- uGGCGGUggCGCGCGGU--UGUCG---------CGGG- -5'
16179 5' -63.1 NC_004065.1 + 158463 0.66 0.676993
Target:  5'- uGCCGUCAUCaCGCGCCucuccccgAACA-CGUCCg -3'
miRNA:   3'- -UGGCGGUGGcGCGCGG--------UUGUcGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 125362 0.66 0.714394
Target:  5'- gACCcuCCGgCGCGCGCaccuugguCAGCuccAGCGCCUg -3'
miRNA:   3'- -UGGc-GGUgGCGCGCG--------GUUG---UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 91262 0.66 0.686409
Target:  5'- -aCGCCAUCGacCGCGCCGACcuGCaCCUu -3'
miRNA:   3'- ugGCGGUGGC--GCGCGGUUGu-CGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.