miRNA display CGI


Results 1 - 20 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 177526 1.11 0.000835
Target:  5'- cACCGCCACCGCGCGCCAACAGCGCCCa -3'
miRNA:   3'- -UGGCGGUGGCGCGCGGUUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 177363 0.86 0.045977
Target:  5'- uCCGCCACCGCcacCGCCAGCGGCGgCCa -3'
miRNA:   3'- uGGCGGUGGCGc--GCGGUUGUCGCgGG- -5'
16179 5' -63.1 NC_004065.1 + 99664 0.84 0.060626
Target:  5'- aGCCGgCGgCGCgGCGCCGACAGCGUCCg -3'
miRNA:   3'- -UGGCgGUgGCG-CGCGGUUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 78658 0.84 0.065349
Target:  5'- gGCCGCCAgCGCagcggccgGCGCC-GCGGCGCCCg -3'
miRNA:   3'- -UGGCGGUgGCG--------CGCGGuUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 66543 0.83 0.074021
Target:  5'- cGCCGCCACCgGCGcCGCCGACGGaGCUCg -3'
miRNA:   3'- -UGGCGGUGG-CGC-GCGGUUGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 184487 0.83 0.075883
Target:  5'- gGCUGCCGCCGC-CGCC-GCGGCGCCg -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGuUGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 88410 0.82 0.081743
Target:  5'- aGCCGCCACCGC-CGgCAGCGGaGCCCg -3'
miRNA:   3'- -UGGCGGUGGCGcGCgGUUGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 75872 0.82 0.081743
Target:  5'- cGCCGCCGCCGC-CGCCGcCAcCGCCCg -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGUuGUcGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 41292 0.81 0.0918
Target:  5'- uUCGCCGCCGUGCGCCugcuauuaagccugGACAGCgucGCCCg -3'
miRNA:   3'- uGGCGGUGGCGCGCGG--------------UUGUCG---CGGG- -5'
16179 5' -63.1 NC_004065.1 + 170309 0.81 0.092481
Target:  5'- gACgGUCGCCGUGCGCCGcggccgcuCGGCGCCCu -3'
miRNA:   3'- -UGgCGGUGGCGCGCGGUu-------GUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 152575 0.81 0.099552
Target:  5'- cGCCGCuugguguacggCACCGCGUcgucguccGUCAGCAGCGCCCg -3'
miRNA:   3'- -UGGCG-----------GUGGCGCG--------CGGUUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 101277 0.8 0.112481
Target:  5'- uGCCGCUGCCGC-UGCCGACGGCuGCCUc -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGUUGUCG-CGGG- -5'
16179 5' -63.1 NC_004065.1 + 126264 0.8 0.115249
Target:  5'- aGCCGCC-CaGCGCGuUCAGCAGCGCCUg -3'
miRNA:   3'- -UGGCGGuGgCGCGC-GGUUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 181926 0.8 0.118081
Target:  5'- cGCCGCCACCGC-CGCCGccACAG-GUCCg -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGU--UGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 105932 0.8 0.120977
Target:  5'- -aCGCCACCGCGUGCgGGgGGUGCUCg -3'
miRNA:   3'- ugGCGGUGGCGCGCGgUUgUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 200057 0.8 0.120977
Target:  5'- cGCCGCCGCCGC-CGCCAGCaccGGUcCCCg -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGUUG---UCGcGGG- -5'
16179 5' -63.1 NC_004065.1 + 91484 0.8 0.122154
Target:  5'- uCCGCCGCCGCucgugccgcguucgaGCGCCAACAGC-CCg -3'
miRNA:   3'- uGGCGGUGGCG---------------CGCGGUUGUCGcGGg -5'
16179 5' -63.1 NC_004065.1 + 97614 0.79 0.126969
Target:  5'- gGCCGCCGCCGC-UGCCGAagAGCcGCCCu -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGUUg-UCG-CGGG- -5'
16179 5' -63.1 NC_004065.1 + 125730 0.79 0.130066
Target:  5'- cCCGCCugCGCGaaCGCCucaGACAGgGCCCg -3'
miRNA:   3'- uGGCGGugGCGC--GCGG---UUGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 58064 0.79 0.136472
Target:  5'- uCCGCCGCCGC-CGCCGcCAcCGCCCg -3'
miRNA:   3'- uGGCGGUGGCGcGCGGUuGUcGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.