Results 21 - 40 of 568 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16179 | 5' | -63.1 | NC_004065.1 | + | 184037 | 0.79 | 0.138782 |
Target: 5'- cGCCGCCACgGCGC-CCAggucgccguuacacACGGCGUCCu -3' miRNA: 3'- -UGGCGGUGgCGCGcGGU--------------UGUCGCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 127323 | 0.79 | 0.139782 |
Target: 5'- cGCCGaCugCGCGCGUCAAgAGCGCuCCg -3' miRNA: 3'- -UGGCgGugGCGCGCGGUUgUCGCG-GG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 199521 | 0.79 | 0.139782 |
Target: 5'- gGCCGCCA-CGUGCGCgCAGCcgGGCGCCUc -3' miRNA: 3'- -UGGCGGUgGCGCGCG-GUUG--UCGCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 35573 | 0.79 | 0.139783 |
Target: 5'- -gCGCCGCCGUGC-CCAACcgcuucgaccgaGGCGCCCg -3' miRNA: 3'- ugGCGGUGGCGCGcGGUUG------------UCGCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 149630 | 0.78 | 0.146625 |
Target: 5'- cACCGUCACCG-GCGCCGuCGGCagGCCCu -3' miRNA: 3'- -UGGCGGUGGCgCGCGGUuGUCG--CGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 118086 | 0.78 | 0.153772 |
Target: 5'- aAUCGuCCACCGCGa--CGGCGGCGCCCa -3' miRNA: 3'- -UGGC-GGUGGCGCgcgGUUGUCGCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 24599 | 0.78 | 0.157463 |
Target: 5'- cGCCGCCACCGC-CGCCGccgguguuGCgaaAGCGCCa -3' miRNA: 3'- -UGGCGGUGGCGcGCGGU--------UG---UCGCGGg -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 37183 | 0.78 | 0.161233 |
Target: 5'- uCCGCCGCCGUcaccgagagcgGCuGCCucaagcGCAGCGCCCa -3' miRNA: 3'- uGGCGGUGGCG-----------CG-CGGu-----UGUCGCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 161454 | 0.78 | 0.165085 |
Target: 5'- cGCCGCCGCCGCGuUGCuCGcCAG-GCCCa -3' miRNA: 3'- -UGGCGGUGGCGC-GCG-GUuGUCgCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 127643 | 0.78 | 0.165085 |
Target: 5'- cGCUGCCGCUGCgGCGCCGAgGGCGgCg -3' miRNA: 3'- -UGGCGGUGGCG-CGCGGUUgUCGCgGg -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 205174 | 0.77 | 0.169019 |
Target: 5'- gGCCGCCGUCGC-CGCCAACaucgGGCGCCg -3' miRNA: 3'- -UGGCGGUGGCGcGCGGUUG----UCGCGGg -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 149234 | 0.77 | 0.169019 |
Target: 5'- uGCCGCCGCCGC-CGCCGcCGuCGCCUg -3' miRNA: 3'- -UGGCGGUGGCGcGCGGUuGUcGCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 138826 | 0.77 | 0.17714 |
Target: 5'- -gCGCCgauGCCGCGCacGCCGACGGCGCUUc -3' miRNA: 3'- ugGCGG---UGGCGCG--CGGUUGUCGCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 98164 | 0.77 | 0.189971 |
Target: 5'- cGCCGCCACCGC-CGCCuaggcuCAGCGUg- -3' miRNA: 3'- -UGGCGGUGGCGcGCGGuu----GUCGCGgg -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 102795 | 0.77 | 0.189971 |
Target: 5'- cCCGCCACCGCGC-CCGauccucGCGGcCGCCg -3' miRNA: 3'- uGGCGGUGGCGCGcGGU------UGUC-GCGGg -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 173312 | 0.77 | 0.194426 |
Target: 5'- uGCCGCCGCCGC-CGCCGcuGCGGCGg-- -3' miRNA: 3'- -UGGCGGUGGCGcGCGGU--UGUCGCggg -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 124459 | 0.77 | 0.194426 |
Target: 5'- cCCGCCgACgGCGCGCCGugccGCuGCGCCg -3' miRNA: 3'- uGGCGG-UGgCGCGCGGU----UGuCGCGGg -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 100556 | 0.77 | 0.194426 |
Target: 5'- uGCCGCCGCUgGUGCGCUuGCGGCuuuuuuccGCCCg -3' miRNA: 3'- -UGGCGGUGG-CGCGCGGuUGUCG--------CGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 128430 | 0.76 | 0.198973 |
Target: 5'- cGCCGCCACCgagucugaGCGCGgCGGaGGCGUCCg -3' miRNA: 3'- -UGGCGGUGG--------CGCGCgGUUgUCGCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 155431 | 0.76 | 0.20221 |
Target: 5'- gGCCGCCACCGC-CaCCGACGGCaccaacugucccugGCCCc -3' miRNA: 3'- -UGGCGGUGGCGcGcGGUUGUCG--------------CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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