miRNA display CGI


Results 41 - 60 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 69407 0.76 0.208344
Target:  5'- aGCUGCCgACgGgGCGCCAGguGCGCgCCg -3'
miRNA:   3'- -UGGCGG-UGgCgCGCGGUUguCGCG-GG- -5'
16179 5' -63.1 NC_004065.1 + 101619 0.76 0.208344
Target:  5'- cGCCGCCGCCGC-UGCCGcuCGGCcCCCa -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGUu-GUCGcGGG- -5'
16179 5' -63.1 NC_004065.1 + 93398 0.76 0.208344
Target:  5'- cGCCGCUccggACCGC-CGCCucggacCAGCGCCCc -3'
miRNA:   3'- -UGGCGG----UGGCGcGCGGuu----GUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 61474 0.76 0.208344
Target:  5'- cGCCGCCGCCGcCGCuGCCAcCAcCGCCg -3'
miRNA:   3'- -UGGCGGUGGC-GCG-CGGUuGUcGCGGg -5'
16179 5' -63.1 NC_004065.1 + 159915 0.76 0.213171
Target:  5'- cGCCGCCGCCGC-CGCUGcCGGUGCUg -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGUuGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 73719 0.76 0.213171
Target:  5'- cGCCGCCGCUGCugGCGCCAcuGCuGcCGCCg -3'
miRNA:   3'- -UGGCGGUGGCG--CGCGGU--UGuC-GCGGg -5'
16179 5' -63.1 NC_004065.1 + 197785 0.76 0.218093
Target:  5'- gAUCGCCGguguCCGCGUugGUCAcCAGCGCCCg -3'
miRNA:   3'- -UGGCGGU----GGCGCG--CGGUuGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 66779 0.76 0.218093
Target:  5'- -gCGCCGCCGCuGCGCCGacgaaacaugaGCGGaCGUCCg -3'
miRNA:   3'- ugGCGGUGGCG-CGCGGU-----------UGUC-GCGGG- -5'
16179 5' -63.1 NC_004065.1 + 95166 0.76 0.218093
Target:  5'- cGCCGCCGCCGUGCaggGUC--CAGgGCCCg -3'
miRNA:   3'- -UGGCGGUGGCGCG---CGGuuGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 77490 0.76 0.223113
Target:  5'- aGCUGCCgaagaaGCCG-GCGCCGGCGGaGCCCg -3'
miRNA:   3'- -UGGCGG------UGGCgCGCGGUUGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 45541 0.76 0.223113
Target:  5'- -gCGCCGCgGCgGCGgCGGCAGCcGCCCa -3'
miRNA:   3'- ugGCGGUGgCG-CGCgGUUGUCG-CGGG- -5'
16179 5' -63.1 NC_004065.1 + 162572 0.75 0.22823
Target:  5'- cACCGCCGCCuCG-GCCGACAG-GUCCg -3'
miRNA:   3'- -UGGCGGUGGcGCgCGGUUGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 172558 0.75 0.233447
Target:  5'- cACCaCCACCGcCGCGCCAucgccacgACGGCGUCg -3'
miRNA:   3'- -UGGcGGUGGC-GCGCGGU--------UGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 100010 0.75 0.233447
Target:  5'- aGCCGCCGCCGC-CGUaCAGCAuCGCCUc -3'
miRNA:   3'- -UGGCGGUGGCGcGCG-GUUGUcGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 117159 0.75 0.233447
Target:  5'- -aCGgCACCGacaGCGCCGACGGgGUCCg -3'
miRNA:   3'- ugGCgGUGGCg--CGCGGUUGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 161265 0.75 0.24418
Target:  5'- gGCCGCCagcACCGcCGCGauguccgaguCCGGCAGCGaCCCc -3'
miRNA:   3'- -UGGCGG---UGGC-GCGC----------GGUUGUCGC-GGG- -5'
16179 5' -63.1 NC_004065.1 + 150712 0.75 0.248032
Target:  5'- aACCGCCGCCggugggaggcccagGC-CGUCGACAGCucGCCCa -3'
miRNA:   3'- -UGGCGGUGG--------------CGcGCGGUUGUCG--CGGG- -5'
16179 5' -63.1 NC_004065.1 + 116715 0.75 0.249699
Target:  5'- cCCGCguCCgGCGCGCgAGCGGCgucGCCCg -3'
miRNA:   3'- uGGCGguGG-CGCGCGgUUGUCG---CGGG- -5'
16179 5' -63.1 NC_004065.1 + 141091 0.75 0.249699
Target:  5'- gGCCaGCUACCGcCGCGCCuuCAGCGgCa -3'
miRNA:   3'- -UGG-CGGUGGC-GCGCGGuuGUCGCgGg -5'
16179 5' -63.1 NC_004065.1 + 130087 0.75 0.25532
Target:  5'- aGCCGCCGCCGCG-GCgGucCGGCGUCa -3'
miRNA:   3'- -UGGCGGUGGCGCgCGgUu-GUCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.