miRNA display CGI


Results 21 - 40 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 131757 0.66 0.714394
Target:  5'- uCCGCgaGgCGCGCGCC--CAGgGCCg -3'
miRNA:   3'- uGGCGg-UgGCGCGCGGuuGUCgCGGg -5'
16179 5' -63.1 NC_004065.1 + 167553 0.66 0.714394
Target:  5'- cGCCGCgGCCGCuccUGCCGucgcCGGUGCUUc -3'
miRNA:   3'- -UGGCGgUGGCGc--GCGGUu---GUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 109133 0.66 0.714394
Target:  5'- uGCUGUCGCCGCGa---GACGcCGCCCu -3'
miRNA:   3'- -UGGCGGUGGCGCgcggUUGUcGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 209596 0.66 0.714394
Target:  5'- uGCCGUUAUCGUacacCGUCAACAGCGgCa -3'
miRNA:   3'- -UGGCGGUGGCGc---GCGGUUGUCGCgGg -5'
16179 5' -63.1 NC_004065.1 + 126161 0.66 0.714394
Target:  5'- uCCGCCAUgaucgcguggugCGCGauCGCCGucACGGCGUUCu -3'
miRNA:   3'- uGGCGGUG------------GCGC--GCGGU--UGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 175975 0.66 0.714394
Target:  5'- uGCCGCUcCCGCGaaCCuuuCGucGCGCCCu -3'
miRNA:   3'- -UGGCGGuGGCGCgcGGuu-GU--CGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 144230 0.66 0.714394
Target:  5'- cGCCGaCGCCGguucuCGCGCCu-CGGuCGCCg -3'
miRNA:   3'- -UGGCgGUGGC-----GCGCGGuuGUC-GCGGg -5'
16179 5' -63.1 NC_004065.1 + 92552 0.66 0.714394
Target:  5'- gGCgCGCgCACgCGCGCGCauuauauaCAAUAGCGuuauaCCCg -3'
miRNA:   3'- -UG-GCG-GUG-GCGCGCG--------GUUGUCGC-----GGG- -5'
16179 5' -63.1 NC_004065.1 + 62030 0.66 0.714394
Target:  5'- gUCGCCAUCGCuGCugcuGCUggUGGUGCCg -3'
miRNA:   3'- uGGCGGUGGCG-CG----CGGuuGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 125362 0.66 0.714394
Target:  5'- gACCcuCCGgCGCGCGCaccuugguCAGCuccAGCGCCUg -3'
miRNA:   3'- -UGGc-GGUgGCGCGCG--------GUUG---UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 110186 0.66 0.714394
Target:  5'- uGCgGCgGCCGCgacGCGCCGc---CGCCCg -3'
miRNA:   3'- -UGgCGgUGGCG---CGCGGUugucGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 21735 0.66 0.714394
Target:  5'- uUCGCUGCCGCuaucuugguaCGUCGuCAGCGCCUc -3'
miRNA:   3'- uGGCGGUGGCGc---------GCGGUuGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 143226 0.66 0.714394
Target:  5'- gGCCGCguuCGCCGCGCccgucuucGCUAACccGCGUCa -3'
miRNA:   3'- -UGGCG---GUGGCGCG--------CGGUUGu-CGCGGg -5'
16179 5' -63.1 NC_004065.1 + 229634 0.66 0.714394
Target:  5'- cACCGUC-UCGUGCGCCAucccggccggcgGCAGUGgCa -3'
miRNA:   3'- -UGGCGGuGGCGCGCGGU------------UGUCGCgGg -5'
16179 5' -63.1 NC_004065.1 + 163291 0.66 0.714394
Target:  5'- -aCGCCGCCGgG-GuCCGACggcacgGGCGCCa -3'
miRNA:   3'- ugGCGGUGGCgCgC-GGUUG------UCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 66551 0.66 0.711617
Target:  5'- aACCGCgCGgCGUGCgagucguucucgucGCUGGCgAGCGCCUg -3'
miRNA:   3'- -UGGCG-GUgGCGCG--------------CGGUUG-UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 13149 0.66 0.707906
Target:  5'- -gCGCCGCCGCGaacgaccgucaaacCGgugagaaaccguaCAGCGGCGUCCg -3'
miRNA:   3'- ugGCGGUGGCGC--------------GCg------------GUUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 164560 0.66 0.705116
Target:  5'- aGCCGgCGgCG-GCGCCGACcgcuucGCGCuCCa -3'
miRNA:   3'- -UGGCgGUgGCgCGCGGUUGu-----CGCG-GG- -5'
16179 5' -63.1 NC_004065.1 + 200450 0.66 0.705116
Target:  5'- cACCGCgGCCGC-CGUCAgAUAGCgggagcgcgGCCUg -3'
miRNA:   3'- -UGGCGgUGGCGcGCGGU-UGUCG---------CGGG- -5'
16179 5' -63.1 NC_004065.1 + 118335 0.66 0.705116
Target:  5'- gACCGCCGaCGUccaugGCGUCGGCgucGGCGUCUg -3'
miRNA:   3'- -UGGCGGUgGCG-----CGCGGUUG---UCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.