miRNA display CGI


Results 41 - 60 of 568 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 80324 0.66 0.705116
Target:  5'- -gCGCgGCCGCG-GCCcccCGGCGUUCg -3'
miRNA:   3'- ugGCGgUGGCGCgCGGuu-GUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 114963 0.66 0.705116
Target:  5'- gGCCGCguCCucgcGCGCGCCGuuGCccucggcccuGGCGgCCg -3'
miRNA:   3'- -UGGCGguGG----CGCGCGGU--UG----------UCGCgGG- -5'
16179 5' -63.1 NC_004065.1 + 159533 0.66 0.705116
Target:  5'- cGCCGCCAUCGC-CuUC-ACGGUGUCCc -3'
miRNA:   3'- -UGGCGGUGGCGcGcGGuUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 169662 0.66 0.705116
Target:  5'- aACCuGCUcaucgacaugACCGUGCGCaccaacgcguACGGCGCCg -3'
miRNA:   3'- -UGG-CGG----------UGGCGCGCGgu--------UGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 67114 0.66 0.705116
Target:  5'- cGCUGgaCGCCGUGCuggaCAGCGGCGCgCg -3'
miRNA:   3'- -UGGCg-GUGGCGCGcg--GUUGUCGCGgG- -5'
16179 5' -63.1 NC_004065.1 + 35659 0.66 0.705116
Target:  5'- gACCgGCCGCCGauCGCC-ACGuCGCUCg -3'
miRNA:   3'- -UGG-CGGUGGCgcGCGGuUGUcGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 202005 0.66 0.705116
Target:  5'- gGCCGCCAaCGCgaugGCGuCCuccuCGGCGCUg -3'
miRNA:   3'- -UGGCGGUgGCG----CGC-GGuu--GUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 200450 0.66 0.705116
Target:  5'- cACCGCgGCCGC-CGUCAgAUAGCgggagcgcgGCCUg -3'
miRNA:   3'- -UGGCGgUGGCGcGCGGU-UGUCG---------CGGG- -5'
16179 5' -63.1 NC_004065.1 + 151529 0.66 0.705116
Target:  5'- cGCUGCCgGCCgggcggugucggGCGCGCUugacGCGGCGCg- -3'
miRNA:   3'- -UGGCGG-UGG------------CGCGCGGu---UGUCGCGgg -5'
16179 5' -63.1 NC_004065.1 + 188975 0.66 0.705116
Target:  5'- uUCGUCGCCGCGCGgCCcgAGCucuGCGgCUu -3'
miRNA:   3'- uGGCGGUGGCGCGC-GG--UUGu--CGCgGG- -5'
16179 5' -63.1 NC_004065.1 + 154143 0.66 0.705116
Target:  5'- gAUCGCC-CCGgGCGgUGGCGGCGgCg -3'
miRNA:   3'- -UGGCGGuGGCgCGCgGUUGUCGCgGg -5'
16179 5' -63.1 NC_004065.1 + 174825 0.66 0.705116
Target:  5'- cUCGCUcguUCGCGuCGCUGACuAGCGCUCu -3'
miRNA:   3'- uGGCGGu--GGCGC-GCGGUUG-UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 172251 0.66 0.705116
Target:  5'- gACUGaCCACCGagaGCGaCGGCGGCGgCg -3'
miRNA:   3'- -UGGC-GGUGGCg--CGCgGUUGUCGCgGg -5'
16179 5' -63.1 NC_004065.1 + 159748 0.66 0.705116
Target:  5'- gGCCGCCGCgGgguUGCGCCAguucuuucGCAuguGCGUCa -3'
miRNA:   3'- -UGGCGGUGgC---GCGCGGU--------UGU---CGCGGg -5'
16179 5' -63.1 NC_004065.1 + 77365 0.66 0.705116
Target:  5'- cGCCGUCGCCGCcguugGCuCCGAUgacgAGCGUCg -3'
miRNA:   3'- -UGGCGGUGGCG-----CGcGGUUG----UCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 46200 0.66 0.699524
Target:  5'- gGCCGaacgacaaaCACCGCGCGgaguCCGggcuccgaaggaucuACcGCGCCCu -3'
miRNA:   3'- -UGGCg--------GUGGCGCGC----GGU---------------UGuCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 63712 0.66 0.695786
Target:  5'- gGCCGUgAUCGCcugguggucgGCGCCGuagACAuaGCCCu -3'
miRNA:   3'- -UGGCGgUGGCG----------CGCGGU---UGUcgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 79233 0.66 0.695786
Target:  5'- cAUCGCgCACCaGCGgaucaCGCUGACGGCGCg- -3'
miRNA:   3'- -UGGCG-GUGG-CGC-----GCGGUUGUCGCGgg -5'
16179 5' -63.1 NC_004065.1 + 197084 0.66 0.695786
Target:  5'- -aCGCCcgcauCCGCGCgggaGCCGACcG-GCCCg -3'
miRNA:   3'- ugGCGGu----GGCGCG----CGGUUGuCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 84263 0.66 0.695786
Target:  5'- cCCGCgACCgGCGCGCgacgCGAuCGGCGCaCUc -3'
miRNA:   3'- uGGCGgUGG-CGCGCG----GUU-GUCGCG-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.