miRNA display CGI


Results 61 - 80 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 84263 0.66 0.695786
Target:  5'- cCCGCgACCgGCGCGCgacgCGAuCGGCGCaCUc -3'
miRNA:   3'- uGGCGgUGG-CGCGCG----GUU-GUCGCG-GG- -5'
16179 5' -63.1 NC_004065.1 + 142422 0.66 0.695786
Target:  5'- uUCGCCuGCCgGCGCGCCGGCuccucAGgGUCa -3'
miRNA:   3'- uGGCGG-UGG-CGCGCGGUUG-----UCgCGGg -5'
16179 5' -63.1 NC_004065.1 + 87585 0.66 0.695786
Target:  5'- gAUCGCCuucaugACCcugaggagccgGCGCGCCGGCAGgCgaaagaugGCCCg -3'
miRNA:   3'- -UGGCGG------UGG-----------CGCGCGGUUGUC-G--------CGGG- -5'
16179 5' -63.1 NC_004065.1 + 197084 0.66 0.695786
Target:  5'- -aCGCCcgcauCCGCGCgggaGCCGACcG-GCCCg -3'
miRNA:   3'- ugGCGGu----GGCGCG----CGGUUGuCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 111602 0.66 0.695786
Target:  5'- -aCGCCGCCGUGUucGCCGGCGagaucgaucccGaCGCCg -3'
miRNA:   3'- ugGCGGUGGCGCG--CGGUUGU-----------C-GCGGg -5'
16179 5' -63.1 NC_004065.1 + 61971 0.66 0.695786
Target:  5'- uUCGCCGCaaccaggaGCaGCaCCAGCAGCcCCCg -3'
miRNA:   3'- uGGCGGUGg-------CG-CGcGGUUGUCGcGGG- -5'
16179 5' -63.1 NC_004065.1 + 186875 0.66 0.695786
Target:  5'- cCCGCCGuCCGUGCGCguGuCuuccGCGgCCg -3'
miRNA:   3'- uGGCGGU-GGCGCGCGguU-Gu---CGCgGG- -5'
16179 5' -63.1 NC_004065.1 + 79233 0.66 0.695786
Target:  5'- cAUCGCgCACCaGCGgaucaCGCUGACGGCGCg- -3'
miRNA:   3'- -UGGCG-GUGG-CGC-----GCGGUUGUCGCGgg -5'
16179 5' -63.1 NC_004065.1 + 63712 0.66 0.695786
Target:  5'- gGCCGUgAUCGCcugguggucgGCGCCGuagACAuaGCCCu -3'
miRNA:   3'- -UGGCGgUGGCG----------CGCGGU---UGUcgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 110957 0.66 0.69485
Target:  5'- uGCCGCgCACCGUGCaGCUgagGACgggucagAGCGUCg -3'
miRNA:   3'- -UGGCG-GUGGCGCG-CGG---UUG-------UCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 127108 0.66 0.690165
Target:  5'- uCCGUCGCCGuCcaguucucccccaucGCGgCGGCGGCGCUa -3'
miRNA:   3'- uGGCGGUGGC-G---------------CGCgGUUGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 112967 0.66 0.690165
Target:  5'- cGCCGCgGCCGaacguucgcugaagGCGCgguGCAGCGUCUc -3'
miRNA:   3'- -UGGCGgUGGCg-------------CGCGgu-UGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 8702 0.66 0.686409
Target:  5'- gUCGCCAguaGCGCGUUAGgGGgGCCUg -3'
miRNA:   3'- uGGCGGUgg-CGCGCGGUUgUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 96587 0.66 0.686409
Target:  5'- aAUCGCagaacgagGCCGaCGCGCCcgaauacgacACGGCGUCCa -3'
miRNA:   3'- -UGGCGg-------UGGC-GCGCGGu---------UGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 140570 0.66 0.686409
Target:  5'- -aCGCCGCagaGCaGCGUCuucuucaagAAgGGCGCCCu -3'
miRNA:   3'- ugGCGGUGg--CG-CGCGG---------UUgUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 47869 0.66 0.686409
Target:  5'- cAUgGCCGCgGUGUGCUu-CGGUGCCg -3'
miRNA:   3'- -UGgCGGUGgCGCGCGGuuGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 87540 0.66 0.686409
Target:  5'- gACCGCCACCcccuggcuCGCGUCcACcGC-CCCa -3'
miRNA:   3'- -UGGCGGUGGc-------GCGCGGuUGuCGcGGG- -5'
16179 5' -63.1 NC_004065.1 + 68208 0.66 0.686409
Target:  5'- cCCGCCcguCCGUcCGuCCAu--GCGCCCa -3'
miRNA:   3'- uGGCGGu--GGCGcGC-GGUuguCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 63099 0.66 0.686409
Target:  5'- gUCGCUGuaGCGUGCCGagACAGCcgguggacgGCCCg -3'
miRNA:   3'- uGGCGGUggCGCGCGGU--UGUCG---------CGGG- -5'
16179 5' -63.1 NC_004065.1 + 131370 0.66 0.686409
Target:  5'- cCCGUCagcaACCGCGCGUacguacgagCGACcgAGCGCaCCg -3'
miRNA:   3'- uGGCGG----UGGCGCGCG---------GUUG--UCGCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.