miRNA display CGI


Results 1 - 20 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 344 0.7 0.464051
Target:  5'- gAUCGCCGagcggaCGCGCGCCc-CGaCGCCCa -3'
miRNA:   3'- -UGGCGGUg-----GCGCGCGGuuGUcGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 374 0.69 0.517282
Target:  5'- cACCuGCCACUGC-CGCCGGCcgggauGGCGCa- -3'
miRNA:   3'- -UGG-CGGUGGCGcGCGGUUG------UCGCGgg -5'
16179 5' -63.1 NC_004065.1 + 482 0.69 0.517282
Target:  5'- aGCCuCCggGCCGCGCGCC----GCGUCCg -3'
miRNA:   3'- -UGGcGG--UGGCGCGCGGuuguCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 529 0.74 0.291243
Target:  5'- cCCGCCAgCGUGUgaaGCUuccgcgacgAGCGGCGCCCg -3'
miRNA:   3'- uGGCGGUgGCGCG---CGG---------UUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 531 0.67 0.658074
Target:  5'- -aCGCgGUgGCGCGCCcccuguGCgAGCGCCCc -3'
miRNA:   3'- ugGCGgUGgCGCGCGGu-----UG-UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 3724 0.68 0.572787
Target:  5'- -aCGCCACCacagGCaGCGCUGAUAGUGUCa -3'
miRNA:   3'- ugGCGGUGG----CG-CGCGGUUGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 4486 0.68 0.59163
Target:  5'- gUCGCCAUUGaGgGCCAGCAGCuGCgCg -3'
miRNA:   3'- uGGCGGUGGCgCgCGGUUGUCG-CGgG- -5'
16179 5' -63.1 NC_004065.1 + 4647 0.67 0.639082
Target:  5'- -gCGCCAgCGCcccCGCCGcgGGCGUCCa -3'
miRNA:   3'- ugGCGGUgGCGc--GCGGUugUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 5979 0.67 0.667546
Target:  5'- cGCgGCCACCGC-CGUCAugGcccucGgGCCUa -3'
miRNA:   3'- -UGgCGGUGGCGcGCGGUugU-----CgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 6130 0.67 0.639082
Target:  5'- -aCGCCGCCGC-CGCCAGCuccuacuCGUCa -3'
miRNA:   3'- ugGCGGUGGCGcGCGGUUGuc-----GCGGg -5'
16179 5' -63.1 NC_004065.1 + 6805 0.66 0.714394
Target:  5'- gACCGCguCGCCGCuacCGCCGACGaCuCCCg -3'
miRNA:   3'- -UGGCG--GUGGCGc--GCGGUUGUcGcGGG- -5'
16179 5' -63.1 NC_004065.1 + 6914 0.66 0.714394
Target:  5'- gGCgGCUucaGCUGCGgGCaCGGCcucGGCGUCCg -3'
miRNA:   3'- -UGgCGG---UGGCGCgCG-GUUG---UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 8702 0.66 0.686409
Target:  5'- gUCGCCAguaGCGCGUUAGgGGgGCCUg -3'
miRNA:   3'- uGGCGGUgg-CGCGCGGUUgUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 13149 0.66 0.707906
Target:  5'- -gCGCCGCCGCGaacgaccgucaaacCGgugagaaaccguaCAGCGGCGUCCg -3'
miRNA:   3'- ugGCGGUGGCGC--------------GCg------------GUUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 18539 0.67 0.633379
Target:  5'- gAUCGUCACCGgGCGCCuggcucgcauggccgAACGGCuGCg- -3'
miRNA:   3'- -UGGCGGUGGCgCGCGG---------------UUGUCG-CGgg -5'
16179 5' -63.1 NC_004065.1 + 19203 0.69 0.544806
Target:  5'- gGCCGCuCugCGCGaGCCGguggucgucuccACAG-GCCCu -3'
miRNA:   3'- -UGGCG-GugGCGCgCGGU------------UGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 21096 0.7 0.455456
Target:  5'- gGCCGCCACgacggagagaCGUGUGgCAcuuucuGCuGCGCCCg -3'
miRNA:   3'- -UGGCGGUG----------GCGCGCgGU------UGuCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 21318 0.67 0.639082
Target:  5'- gACCGCCuCgGCGUGC--GCGGCGgUCa -3'
miRNA:   3'- -UGGCGGuGgCGCGCGguUGUCGCgGG- -5'
16179 5' -63.1 NC_004065.1 + 21735 0.66 0.714394
Target:  5'- uUCGCUGCCGCuaucuugguaCGUCGuCAGCGCCUc -3'
miRNA:   3'- uGGCGGUGGCGc---------GCGGUuGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 21989 0.74 0.261045
Target:  5'- gGCCGCCACgGCcaCGCCGACGGUcaucGCCg -3'
miRNA:   3'- -UGGCGGUGgCGc-GCGGUUGUCG----CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.