miRNA display CGI


Results 21 - 40 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 22232 0.69 0.508229
Target:  5'- gACCGUCAUCGUGC-----CGGCGCCCa -3'
miRNA:   3'- -UGGCGGUGGCGCGcgguuGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 22801 0.69 0.517282
Target:  5'- gACCgGCCACCGU-CGCUAucuUAGUGCCUu -3'
miRNA:   3'- -UGG-CGGUGGCGcGCGGUu--GUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 24497 0.72 0.374619
Target:  5'- cACCGCCGCCGgcccugaGCGCCGgccccaagaugGCGGCGgCa -3'
miRNA:   3'- -UGGCGGUGGCg------CGCGGU-----------UGUCGCgGg -5'
16179 5' -63.1 NC_004065.1 + 24599 0.78 0.157463
Target:  5'- cGCCGCCACCGC-CGCCGccgguguuGCgaaAGCGCCa -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGU--------UG---UCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 26168 0.67 0.610575
Target:  5'- aGCCGuCCuauuCCcCGUGCCGGC-GCGUCCc -3'
miRNA:   3'- -UGGC-GGu---GGcGCGCGGUUGuCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 27283 0.67 0.610575
Target:  5'- gACCGgCGgCGC-CGCCGACGacGCGUCUa -3'
miRNA:   3'- -UGGCgGUgGCGcGCGGUUGU--CGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 27778 0.69 0.542031
Target:  5'- -gCGCCGCCGUcuggagggccuccuGCcCCAGCAGacguCGCCCa -3'
miRNA:   3'- ugGCGGUGGCG--------------CGcGGUUGUC----GCGGG- -5'
16179 5' -63.1 NC_004065.1 + 28354 0.67 0.648584
Target:  5'- uGCCGCCGCagccucgcuuuCGCGCGCCGcuGCuacaacgaaGGCGUg- -3'
miRNA:   3'- -UGGCGGUG-----------GCGCGCGGU--UG---------UCGCGgg -5'
16179 5' -63.1 NC_004065.1 + 28460 0.66 0.680764
Target:  5'- uAUCGCUgaucaGCgGCGaguuguggcgucugGCCGACAGCGCCg -3'
miRNA:   3'- -UGGCGG-----UGgCGCg-------------CGGUUGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 28627 0.66 0.676993
Target:  5'- cCCGCCGCgacgcaucUGUGCGUCGACguGGCaCCCc -3'
miRNA:   3'- uGGCGGUG--------GCGCGCGGUUG--UCGcGGG- -5'
16179 5' -63.1 NC_004065.1 + 28835 0.7 0.446946
Target:  5'- cGCCGCCcgaGCCGggaCGCGCCGcuugguguCGGCGCUg -3'
miRNA:   3'- -UGGCGG---UGGC---GCGCGGUu-------GUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 28944 0.69 0.535574
Target:  5'- aGCCGCCGCCucCGuCGCCGGaggcggGGCGCUa -3'
miRNA:   3'- -UGGCGGUGGc-GC-GCGGUUg-----UCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 29076 0.66 0.686409
Target:  5'- --aGCCGCCGCGCuCCcu--GCGCuCCg -3'
miRNA:   3'- uggCGGUGGCGCGcGGuuguCGCG-GG- -5'
16179 5' -63.1 NC_004065.1 + 29129 0.69 0.508229
Target:  5'- gGCCgGUCGCCcaGCGCGaCgGGCAGCcgaGCCCu -3'
miRNA:   3'- -UGG-CGGUGG--CGCGC-GgUUGUCG---CGGG- -5'
16179 5' -63.1 NC_004065.1 + 29161 0.68 0.582193
Target:  5'- uUCGCCACCGCccGCGCCcccguCGaCGCCg -3'
miRNA:   3'- uGGCGGUGGCG--CGCGGuu---GUcGCGGg -5'
16179 5' -63.1 NC_004065.1 + 29248 0.73 0.317321
Target:  5'- cCCGCCACCGcCGCGCgacgaGAgAGCGaCCg -3'
miRNA:   3'- uGGCGGUGGC-GCGCGg----UUgUCGCgGG- -5'
16179 5' -63.1 NC_004065.1 + 29479 0.69 0.508229
Target:  5'- cGCUGCCGcCCGuCGCccucGCCAugGaCGCCCu -3'
miRNA:   3'- -UGGCGGU-GGC-GCG----CGGUugUcGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 30000 0.66 0.676993
Target:  5'- uAUCGCCagagGCUGCGCGaCCGucacCGGCGCg- -3'
miRNA:   3'- -UGGCGG----UGGCGCGC-GGUu---GUCGCGgg -5'
16179 5' -63.1 NC_004065.1 + 30153 0.71 0.389997
Target:  5'- gGCCGCUcguGCUGUGCGgcaCCGACgAGUGCCUg -3'
miRNA:   3'- -UGGCGG---UGGCGCGC---GGUUG-UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 30470 0.74 0.297602
Target:  5'- gACCGCgGCacgaugggGCGCGcCCGGCuggaGGCGCCCg -3'
miRNA:   3'- -UGGCGgUGg-------CGCGC-GGUUG----UCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.