miRNA display CGI


Results 41 - 60 of 568 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 30585 0.66 0.680764
Target:  5'- uCCGCCGCgGCgaGCGCCucguccgcguuccgaGGCAGCGaCgCg -3'
miRNA:   3'- uGGCGGUGgCG--CGCGG---------------UUGUCGC-GgG- -5'
16179 5' -63.1 NC_004065.1 + 31914 0.7 0.481492
Target:  5'- -aCGCgG-CGCGuCGCCGACAGCGUgCCg -3'
miRNA:   3'- ugGCGgUgGCGC-GCGGUUGUCGCG-GG- -5'
16179 5' -63.1 NC_004065.1 + 32000 0.7 0.488557
Target:  5'- aACCGCCggcgACCGCGaccgccuccgagGCCAucgcGCAGUGUCCc -3'
miRNA:   3'- -UGGCGG----UGGCGCg-----------CGGU----UGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 32084 0.67 0.636231
Target:  5'- uGCCGCgACCGCuucgacuCGCCGACcgacgaugaggacuAcGUGCCCg -3'
miRNA:   3'- -UGGCGgUGGCGc------GCGGUUG--------------U-CGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 32282 0.66 0.714394
Target:  5'- gACCGCCuggaguCgGCGauCGCCAaggugaagcucACGGCGgCCg -3'
miRNA:   3'- -UGGCGGu-----GgCGC--GCGGU-----------UGUCGCgGG- -5'
16179 5' -63.1 NC_004065.1 + 32542 0.72 0.352334
Target:  5'- gACgGCC-CCGuCGCGCCGGCGGUauccGCCg -3'
miRNA:   3'- -UGgCGGuGGC-GCGCGGUUGUCG----CGGg -5'
16179 5' -63.1 NC_004065.1 + 32594 0.69 0.517282
Target:  5'- aGCCuGUCGCCGUagaaGCcgGCCAGCGGgCGCUCg -3'
miRNA:   3'- -UGG-CGGUGGCG----CG--CGGUUGUC-GCGGG- -5'
16179 5' -63.1 NC_004065.1 + 32632 0.67 0.629576
Target:  5'- gGCCGUCACCGgGacugccuGUCAACAuCGCCa -3'
miRNA:   3'- -UGGCGGUGGCgCg------CGGUUGUcGCGGg -5'
16179 5' -63.1 NC_004065.1 + 32864 0.66 0.686409
Target:  5'- aGCUGgCGuCCcuggucgagagGCGCGCCGGCgAGCGUCUg -3'
miRNA:   3'- -UGGCgGU-GG-----------CGCGCGGUUG-UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 33466 0.72 0.367085
Target:  5'- gGCaCGCguUCGCG-GCCGugGGCGCCUa -3'
miRNA:   3'- -UG-GCGguGGCGCgCGGUugUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 33660 0.68 0.601093
Target:  5'- gACCGUC-CgGCGCGCgGGgAGgGCCg -3'
miRNA:   3'- -UGGCGGuGgCGCGCGgUUgUCgCGGg -5'
16179 5' -63.1 NC_004065.1 + 34159 0.66 0.686409
Target:  5'- uCCGCUcagacucugcagACCGUGaGUUGACGGCGCCg -3'
miRNA:   3'- uGGCGG------------UGGCGCgCGGUUGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 34254 0.7 0.464051
Target:  5'- uCCGCCAUgGUcaGCGCgAcACGGCGCCg -3'
miRNA:   3'- uGGCGGUGgCG--CGCGgU-UGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 34666 0.67 0.655228
Target:  5'- cCCGCUAUCGUGUugGCCAccuucaagacgcggGCGcCGCCCa -3'
miRNA:   3'- uGGCGGUGGCGCG--CGGU--------------UGUcGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 34909 0.67 0.667546
Target:  5'- -gUGCUGCgGCGacacCGCCGGCAGCugacGCCCc -3'
miRNA:   3'- ugGCGGUGgCGC----GCGGUUGUCG----CGGG- -5'
16179 5' -63.1 NC_004065.1 + 35217 0.7 0.481492
Target:  5'- cACCGCCACgGCGUucagggGCuCGACGauCGCCCu -3'
miRNA:   3'- -UGGCGGUGgCGCG------CG-GUUGUc-GCGGG- -5'
16179 5' -63.1 NC_004065.1 + 35377 0.7 0.490331
Target:  5'- aGCUGCCAUUGCaCGCCcuggcGCAGCGCa- -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGu----UGUCGCGgg -5'
16179 5' -63.1 NC_004065.1 + 35397 0.67 0.658074
Target:  5'- gACCGUCAUCG-GCGCCGugGGagaGUaCCg -3'
miRNA:   3'- -UGGCGGUGGCgCGCGGUugUCg--CG-GG- -5'
16179 5' -63.1 NC_004065.1 + 35449 0.7 0.455456
Target:  5'- gACUGCCGgaauccaagUCGaCGCGCUGcGCGGUGCCCg -3'
miRNA:   3'- -UGGCGGU---------GGC-GCGCGGU-UGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 35573 0.79 0.139783
Target:  5'- -gCGCCGCCGUGC-CCAACcgcuucgaccgaGGCGCCCg -3'
miRNA:   3'- ugGCGGUGGCGCGcGGUUG------------UCGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.