miRNA display CGI


Results 1 - 20 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 229634 0.66 0.714394
Target:  5'- cACCGUC-UCGUGCGCCAucccggccggcgGCAGUGgCa -3'
miRNA:   3'- -UGGCGGuGGCGCGCGGU------------UGUCGCgGg -5'
16179 5' -63.1 NC_004065.1 + 229505 0.73 0.304067
Target:  5'- gGCgCGCCACCGCGUaguagacucccaGaaAACGGCGUCCa -3'
miRNA:   3'- -UG-GCGGUGGCGCG------------CggUUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 229462 0.73 0.338007
Target:  5'- uGCCGCCAgccCCGuUGCGCgAACagggGGCGCUCg -3'
miRNA:   3'- -UGGCGGU---GGC-GCGCGgUUG----UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 229142 0.68 0.59163
Target:  5'- -aCGCCugUaGCaUGCCGGCggGGCGCCCu -3'
miRNA:   3'- ugGCGGugG-CGcGCGGUUG--UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 225658 0.74 0.284992
Target:  5'- cGCCGCCGCCGuCGCGCUc-CAcGCGCagCCg -3'
miRNA:   3'- -UGGCGGUGGC-GCGCGGuuGU-CGCG--GG- -5'
16179 5' -63.1 NC_004065.1 + 221996 0.66 0.723611
Target:  5'- cCCGaagacgaUACCGCGUGggaCuGCAGCGCCUc -3'
miRNA:   3'- uGGCg------GUGGCGCGCg--GuUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 221886 0.7 0.490331
Target:  5'- gAUgGCCuuCUGCGuCGaCCucGACGGCGCCCg -3'
miRNA:   3'- -UGgCGGu-GGCGC-GC-GG--UUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 221282 0.66 0.723611
Target:  5'- cGCCGCCACCaCG-GCCucCGGuCGUCa -3'
miRNA:   3'- -UGGCGGUGGcGCgCGGuuGUC-GCGGg -5'
16179 5' -63.1 NC_004065.1 + 214596 0.66 0.723611
Target:  5'- aGCCGCCucCCGUGUaauugaGCCGACcgccGGCGUauCCu -3'
miRNA:   3'- -UGGCGGu-GGCGCG------CGGUUG----UCGCG--GG- -5'
16179 5' -63.1 NC_004065.1 + 211871 0.66 0.683588
Target:  5'- -aCGCC-CCGCGgacgauacCGCCAACAucccgucccgcggcGgGCCCg -3'
miRNA:   3'- ugGCGGuGGCGC--------GCGGUUGU--------------CgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 211473 0.67 0.629576
Target:  5'- aGCCGUUcgGCCauGCGaGCCA--GGCGCCCg -3'
miRNA:   3'- -UGGCGG--UGG--CGCgCGGUugUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 210572 0.68 0.59163
Target:  5'- cCCGucCCACCaCGCucaucGCCAGCAGCGCg- -3'
miRNA:   3'- uGGC--GGUGGcGCG-----CGGUUGUCGCGgg -5'
16179 5' -63.1 NC_004065.1 + 209596 0.66 0.714394
Target:  5'- uGCCGUUAUCGUacacCGUCAACAGCGgCa -3'
miRNA:   3'- -UGGCGGUGGCGc---GCGGUUGUCGCgGg -5'
16179 5' -63.1 NC_004065.1 + 209296 0.7 0.490331
Target:  5'- cGCCGUgauCGCCGuCGuCGCCGuCGGUGCCg -3'
miRNA:   3'- -UGGCG---GUGGC-GC-GCGGUuGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 208006 0.73 0.317321
Target:  5'- gGCCGUgGCCGgguuaGUGCCGGCGGCGaugaCCg -3'
miRNA:   3'- -UGGCGgUGGCg----CGCGGUUGUCGCg---GG- -5'
16179 5' -63.1 NC_004065.1 + 207539 0.68 0.59163
Target:  5'- cGCCGCgCGCUcCGCGUCGuc-GCGCCUg -3'
miRNA:   3'- -UGGCG-GUGGcGCGCGGUuguCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 207124 0.72 0.373861
Target:  5'- cGCCGCCACUGacCGCGUugggaggcugcgaCAGCAGCGUgCu -3'
miRNA:   3'- -UGGCGGUGGC--GCGCG-------------GUUGUCGCGgG- -5'
16179 5' -63.1 NC_004065.1 + 205914 0.7 0.490331
Target:  5'- gGCCGCCgagGCCGacgucgGCGCCAugGaCGUCCu -3'
miRNA:   3'- -UGGCGG---UGGCg-----CGCGGUugUcGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 205510 0.74 0.271017
Target:  5'- uGCCGCCGCCaucuuggggccgGCGCucaggGCCGGCGgcggugccaucuacGCGCCCa -3'
miRNA:   3'- -UGGCGGUGG------------CGCG-----CGGUUGU--------------CGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 205250 0.67 0.667546
Target:  5'- cGCUGgCGcgagauacCCGCGCcgGCCAACGGggggcCGCCCa -3'
miRNA:   3'- -UGGCgGU--------GGCGCG--CGGUUGUC-----GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.