miRNA display CGI


Results 21 - 40 of 568 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 205174 0.77 0.169019
Target:  5'- gGCCGCCGUCGC-CGCCAACaucgGGCGCCg -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGUUG----UCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 205013 0.71 0.405782
Target:  5'- cACgGCCccuuGCCGCGC-CC-ACGGaCGCCCa -3'
miRNA:   3'- -UGgCGG----UGGCGCGcGGuUGUC-GCGGG- -5'
16179 5' -63.1 NC_004065.1 + 203669 0.71 0.39784
Target:  5'- cCCGCCGCCGU-CGCC---AGCGCCg -3'
miRNA:   3'- uGGCGGUGGCGcGCGGuugUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 203614 0.68 0.582193
Target:  5'- gGCCGCCGCCGcCGUGgCGgaguuggagGCGGgggcauggggaaCGCCCc -3'
miRNA:   3'- -UGGCGGUGGC-GCGCgGU---------UGUC------------GCGGG- -5'
16179 5' -63.1 NC_004065.1 + 203079 0.67 0.6666
Target:  5'- cCCGCCGCgGC-CGCCGgaGCGGUcucuugaGCCUu -3'
miRNA:   3'- uGGCGGUGgCGcGCGGU--UGUCG-------CGGG- -5'
16179 5' -63.1 NC_004065.1 + 202830 0.68 0.601093
Target:  5'- gACCGCCGCCaugacgcucGCGgGUaugAACAGgGCCa -3'
miRNA:   3'- -UGGCGGUGG---------CGCgCGg--UUGUCgCGGg -5'
16179 5' -63.1 NC_004065.1 + 202384 0.72 0.374619
Target:  5'- gGCCGCagCACCccCGCGCagcGCAGCGCCUu -3'
miRNA:   3'- -UGGCG--GUGGc-GCGCGgu-UGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 202087 0.69 0.526398
Target:  5'- aACUGUgcgCACUGCGUcuucuGUCGGCGGCGCUCg -3'
miRNA:   3'- -UGGCG---GUGGCGCG-----CGGUUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 202005 0.66 0.705116
Target:  5'- gGCCGCCAaCGCgaugGCGuCCuccuCGGCGCUg -3'
miRNA:   3'- -UGGCGGUgGCG----CGC-GGuu--GUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 201354 0.66 0.695786
Target:  5'- -aCGCgaACUGCuGCGCgAGCuGCGCCUc -3'
miRNA:   3'- ugGCGg-UGGCG-CGCGgUUGuCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 201296 0.7 0.464051
Target:  5'- uCCGCCACCGCG-GUCuccuccucgGACAGgaucucCGCCCu -3'
miRNA:   3'- uGGCGGUGGCGCgCGG---------UUGUC------GCGGG- -5'
16179 5' -63.1 NC_004065.1 + 201129 0.7 0.446946
Target:  5'- uCCGCCuuguCCGCcgacucgggGCGCCAGCAGUcCUCg -3'
miRNA:   3'- uGGCGGu---GGCG---------CGCGGUUGUCGcGGG- -5'
16179 5' -63.1 NC_004065.1 + 201039 0.74 0.266286
Target:  5'- cUCGCCACCGC-CGCCGgagACugauccgugucguAGCGCCCc -3'
miRNA:   3'- uGGCGGUGGCGcGCGGU---UG-------------UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 200450 0.66 0.705116
Target:  5'- cACCGCgGCCGC-CGUCAgAUAGCgggagcgcgGCCUg -3'
miRNA:   3'- -UGGCGgUGGCGcGCGGU-UGUCG---------CGGG- -5'
16179 5' -63.1 NC_004065.1 + 200057 0.8 0.120977
Target:  5'- cGCCGCCGCCGC-CGCCAGCaccGGUcCCCg -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGUUG---UCGcGGG- -5'
16179 5' -63.1 NC_004065.1 + 200005 0.68 0.572787
Target:  5'- cCCGUCACCacCGCGCCGgugACGGuCGCgCa -3'
miRNA:   3'- uGGCGGUGGc-GCGCGGU---UGUC-GCGgG- -5'
16179 5' -63.1 NC_004065.1 + 199848 0.67 0.659022
Target:  5'- gGCCaCCACCGCcgcaggcacucgucgGUGCCGcACAGCacgagcggccggucGCCCu -3'
miRNA:   3'- -UGGcGGUGGCG---------------CGCGGU-UGUCG--------------CGGG- -5'
16179 5' -63.1 NC_004065.1 + 199521 0.79 0.139782
Target:  5'- gGCCGCCA-CGUGCGCgCAGCcgGGCGCCUc -3'
miRNA:   3'- -UGGCGGUgGCGCGCG-GUUG--UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 199007 0.68 0.59163
Target:  5'- gGCCGCgGCCGaggGCaaGCuCGAacaguggcuCAGCGCCCg -3'
miRNA:   3'- -UGGCGgUGGCg--CG--CG-GUU---------GUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 198953 0.69 0.548513
Target:  5'- gGCCGCCGCCaugaggaaggcguacGC-CGUCAACagacuccuGGCGCUCg -3'
miRNA:   3'- -UGGCGGUGG---------------CGcGCGGUUG--------UCGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.