miRNA display CGI


Results 1 - 20 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 69407 0.76 0.208344
Target:  5'- aGCUGCCgACgGgGCGCCAGguGCGCgCCg -3'
miRNA:   3'- -UGGCGG-UGgCgCGCGGUUguCGCG-GG- -5'
16179 5' -63.1 NC_004065.1 + 24599 0.78 0.157463
Target:  5'- cGCCGCCACCGC-CGCCGccgguguuGCgaaAGCGCCa -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGU--------UG---UCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 37183 0.78 0.161233
Target:  5'- uCCGCCGCCGUcaccgagagcgGCuGCCucaagcGCAGCGCCCa -3'
miRNA:   3'- uGGCGGUGGCG-----------CG-CGGu-----UGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 127643 0.78 0.165085
Target:  5'- cGCUGCCGCUGCgGCGCCGAgGGCGgCg -3'
miRNA:   3'- -UGGCGGUGGCG-CGCGGUUgUCGCgGg -5'
16179 5' -63.1 NC_004065.1 + 149234 0.77 0.169019
Target:  5'- uGCCGCCGCCGC-CGCCGcCGuCGCCUg -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGUuGUcGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 98164 0.77 0.189971
Target:  5'- cGCCGCCACCGC-CGCCuaggcuCAGCGUg- -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGuu----GUCGCGgg -5'
16179 5' -63.1 NC_004065.1 + 124459 0.77 0.194426
Target:  5'- cCCGCCgACgGCGCGCCGugccGCuGCGCCg -3'
miRNA:   3'- uGGCGG-UGgCGCGCGGU----UGuCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 100556 0.77 0.194426
Target:  5'- uGCCGCCGCUgGUGCGCUuGCGGCuuuuuuccGCCCg -3'
miRNA:   3'- -UGGCGGUGG-CGCGCGGuUGUCG--------CGGG- -5'
16179 5' -63.1 NC_004065.1 + 128430 0.76 0.198973
Target:  5'- cGCCGCCACCgagucugaGCGCGgCGGaGGCGUCCg -3'
miRNA:   3'- -UGGCGGUGG--------CGCGCgGUUgUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 118086 0.78 0.153772
Target:  5'- aAUCGuCCACCGCGa--CGGCGGCGCCCa -3'
miRNA:   3'- -UGGC-GGUGGCGCgcgGUUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 149630 0.78 0.146625
Target:  5'- cACCGUCACCG-GCGCCGuCGGCagGCCCu -3'
miRNA:   3'- -UGGCGGUGGCgCGCGGUuGUCG--CGGG- -5'
16179 5' -63.1 NC_004065.1 + 199521 0.79 0.139782
Target:  5'- gGCCGCCA-CGUGCGCgCAGCcgGGCGCCUc -3'
miRNA:   3'- -UGGCGGUgGCGCGCG-GUUG--UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 78658 0.84 0.065349
Target:  5'- gGCCGCCAgCGCagcggccgGCGCC-GCGGCGCCCg -3'
miRNA:   3'- -UGGCGGUgGCG--------CGCGGuUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 88410 0.82 0.081743
Target:  5'- aGCCGCCACCGC-CGgCAGCGGaGCCCg -3'
miRNA:   3'- -UGGCGGUGGCGcGCgGUUGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 126264 0.8 0.115249
Target:  5'- aGCCGCC-CaGCGCGuUCAGCAGCGCCUg -3'
miRNA:   3'- -UGGCGGuGgCGCGC-GGUUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 105932 0.8 0.120977
Target:  5'- -aCGCCACCGCGUGCgGGgGGUGCUCg -3'
miRNA:   3'- ugGCGGUGGCGCGCGgUUgUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 97614 0.79 0.126969
Target:  5'- gGCCGCCGCCGC-UGCCGAagAGCcGCCCu -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGUUg-UCG-CGGG- -5'
16179 5' -63.1 NC_004065.1 + 125730 0.79 0.130066
Target:  5'- cCCGCCugCGCGaaCGCCucaGACAGgGCCCg -3'
miRNA:   3'- uGGCGGugGCGC--GCGG---UUGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 58064 0.79 0.136472
Target:  5'- uCCGCCGCCGC-CGCCGcCAcCGCCCg -3'
miRNA:   3'- uGGCGGUGGCGcGCGGUuGUcGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 127323 0.79 0.139782
Target:  5'- cGCCGaCugCGCGCGUCAAgAGCGCuCCg -3'
miRNA:   3'- -UGGCgGugGCGCGCGGUUgUCGCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.