miRNA display CGI


Results 41 - 60 of 568 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 97614 0.79 0.126969
Target:  5'- gGCCGCCGCCGC-UGCCGAagAGCcGCCCu -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGUUg-UCG-CGGG- -5'
16179 5' -63.1 NC_004065.1 + 105932 0.8 0.120977
Target:  5'- -aCGCCACCGCGUGCgGGgGGUGCUCg -3'
miRNA:   3'- ugGCGGUGGCGCGCGgUUgUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 126264 0.8 0.115249
Target:  5'- aGCCGCC-CaGCGCGuUCAGCAGCGCCUg -3'
miRNA:   3'- -UGGCGGuGgCGCGC-GGUUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 88410 0.82 0.081743
Target:  5'- aGCCGCCACCGC-CGgCAGCGGaGCCCg -3'
miRNA:   3'- -UGGCGGUGGCGcGCgGUUGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 78658 0.84 0.065349
Target:  5'- gGCCGCCAgCGCagcggccgGCGCC-GCGGCGCCCg -3'
miRNA:   3'- -UGGCGGUgGCG--------CGCGGuUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 127643 0.78 0.165085
Target:  5'- cGCUGCCGCUGCgGCGCCGAgGGCGgCg -3'
miRNA:   3'- -UGGCGGUGGCG-CGCGGUUgUCGCgGg -5'
16179 5' -63.1 NC_004065.1 + 149234 0.77 0.169019
Target:  5'- uGCCGCCGCCGC-CGCCGcCGuCGCCUg -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGUuGUcGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 100010 0.75 0.233447
Target:  5'- aGCCGCCGCCGC-CGUaCAGCAuCGCCUc -3'
miRNA:   3'- -UGGCGGUGGCGcGCG-GUUGUcGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 117159 0.75 0.233447
Target:  5'- -aCGgCACCGacaGCGCCGACGGgGUCCg -3'
miRNA:   3'- ugGCgGUGGCg--CGCGGUUGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 77490 0.76 0.223113
Target:  5'- aGCUGCCgaagaaGCCG-GCGCCGGCGGaGCCCg -3'
miRNA:   3'- -UGGCGG------UGGCgCGCGGUUGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 45541 0.76 0.223113
Target:  5'- -gCGCCGCgGCgGCGgCGGCAGCcGCCCa -3'
miRNA:   3'- ugGCGGUGgCG-CGCgGUUGUCG-CGGG- -5'
16179 5' -63.1 NC_004065.1 + 66779 0.76 0.218093
Target:  5'- -gCGCCGCCGCuGCGCCGacgaaacaugaGCGGaCGUCCg -3'
miRNA:   3'- ugGCGGUGGCG-CGCGGU-----------UGUC-GCGGG- -5'
16179 5' -63.1 NC_004065.1 + 197785 0.76 0.218093
Target:  5'- gAUCGCCGguguCCGCGUugGUCAcCAGCGCCCg -3'
miRNA:   3'- -UGGCGGU----GGCGCG--CGGUuGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 73719 0.76 0.213171
Target:  5'- cGCCGCCGCUGCugGCGCCAcuGCuGcCGCCg -3'
miRNA:   3'- -UGGCGGUGGCG--CGCGGU--UGuC-GCGGg -5'
16179 5' -63.1 NC_004065.1 + 93398 0.76 0.208344
Target:  5'- cGCCGCUccggACCGC-CGCCucggacCAGCGCCCc -3'
miRNA:   3'- -UGGCGG----UGGCGcGCGGuu----GUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 69407 0.76 0.208344
Target:  5'- aGCUGCCgACgGgGCGCCAGguGCGCgCCg -3'
miRNA:   3'- -UGGCGG-UGgCgCGCGGUUguCGCG-GG- -5'
16179 5' -63.1 NC_004065.1 + 128430 0.76 0.198973
Target:  5'- cGCCGCCACCgagucugaGCGCGgCGGaGGCGUCCg -3'
miRNA:   3'- -UGGCGGUGG--------CGCGCgGUUgUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 100556 0.77 0.194426
Target:  5'- uGCCGCCGCUgGUGCGCUuGCGGCuuuuuuccGCCCg -3'
miRNA:   3'- -UGGCGGUGG-CGCGCGGuUGUCG--------CGGG- -5'
16179 5' -63.1 NC_004065.1 + 124459 0.77 0.194426
Target:  5'- cCCGCCgACgGCGCGCCGugccGCuGCGCCg -3'
miRNA:   3'- uGGCGG-UGgCGCGCGGU----UGuCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 98164 0.77 0.189971
Target:  5'- cGCCGCCACCGC-CGCCuaggcuCAGCGUg- -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGuu----GUCGCGgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.