miRNA display CGI


Results 1 - 20 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16179 5' -63.1 NC_004065.1 + 177363 0.86 0.045977
Target:  5'- uCCGCCACCGCcacCGCCAGCGGCGgCCa -3'
miRNA:   3'- uGGCGGUGGCGc--GCGGUUGUCGCgGG- -5'
16179 5' -63.1 NC_004065.1 + 102795 0.77 0.189971
Target:  5'- cCCGCCACCGCGC-CCGauccucGCGGcCGCCg -3'
miRNA:   3'- uGGCGGUGGCGCGcGGU------UGUC-GCGGg -5'
16179 5' -63.1 NC_004065.1 + 155431 0.76 0.20221
Target:  5'- gGCCGCCACCGC-CaCCGACGGCaccaacugucccugGCCCc -3'
miRNA:   3'- -UGGCGGUGGCGcGcGGUUGUCG--------------CGGG- -5'
16179 5' -63.1 NC_004065.1 + 117717 0.66 0.723611
Target:  5'- cCCGUCACCcuCGCGUCucucGCGcGCGCaCCg -3'
miRNA:   3'- uGGCGGUGGc-GCGCGGu---UGU-CGCG-GG- -5'
16179 5' -63.1 NC_004065.1 + 75872 0.82 0.081743
Target:  5'- cGCCGCCGCCGC-CGCCGcCAcCGCCCg -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGUuGUcGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 41292 0.81 0.0918
Target:  5'- uUCGCCGCCGUGCGCCugcuauuaagccugGACAGCgucGCCCg -3'
miRNA:   3'- uGGCGGUGGCGCGCGG--------------UUGUCG---CGGG- -5'
16179 5' -63.1 NC_004065.1 + 152575 0.81 0.099552
Target:  5'- cGCCGCuugguguacggCACCGCGUcgucguccGUCAGCAGCGCCCg -3'
miRNA:   3'- -UGGCG-----------GUGGCGCG--------CGGUUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 101277 0.8 0.112481
Target:  5'- uGCCGCUGCCGC-UGCCGACGGCuGCCUc -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGUUGUCG-CGGG- -5'
16179 5' -63.1 NC_004065.1 + 91484 0.8 0.122154
Target:  5'- uCCGCCGCCGCucgugccgcguucgaGCGCCAACAGC-CCg -3'
miRNA:   3'- uGGCGGUGGCG---------------CGCGGUUGUCGcGGg -5'
16179 5' -63.1 NC_004065.1 + 138826 0.77 0.17714
Target:  5'- -gCGCCgauGCCGCGCacGCCGACGGCGCUUc -3'
miRNA:   3'- ugGCGG---UGGCGCG--CGGUUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 35573 0.79 0.139783
Target:  5'- -gCGCCGCCGUGC-CCAACcgcuucgaccgaGGCGCCCg -3'
miRNA:   3'- ugGCGGUGGCGCGcGGUUG------------UCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 200057 0.8 0.120977
Target:  5'- cGCCGCCGCCGC-CGCCAGCaccGGUcCCCg -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGUUG---UCGcGGG- -5'
16179 5' -63.1 NC_004065.1 + 99664 0.84 0.060626
Target:  5'- aGCCGgCGgCGCgGCGCCGACAGCGUCCg -3'
miRNA:   3'- -UGGCgGUgGCG-CGCGGUUGUCGCGGG- -5'
16179 5' -63.1 NC_004065.1 + 161454 0.78 0.165085
Target:  5'- cGCCGCCGCCGCGuUGCuCGcCAG-GCCCa -3'
miRNA:   3'- -UGGCGGUGGCGC-GCG-GUuGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 66543 0.83 0.074021
Target:  5'- cGCCGCCACCgGCGcCGCCGACGGaGCUCg -3'
miRNA:   3'- -UGGCGGUGG-CGC-GCGGUUGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 181926 0.8 0.118081
Target:  5'- cGCCGCCACCGC-CGCCGccACAG-GUCCg -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGU--UGUCgCGGG- -5'
16179 5' -63.1 NC_004065.1 + 205174 0.77 0.169019
Target:  5'- gGCCGCCGUCGC-CGCCAACaucgGGCGCCg -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGUUG----UCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 173312 0.77 0.194426
Target:  5'- uGCCGCCGCCGC-CGCCGcuGCGGCGg-- -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGU--UGUCGCggg -5'
16179 5' -63.1 NC_004065.1 + 184487 0.83 0.075883
Target:  5'- gGCUGCCGCCGC-CGCC-GCGGCGCCg -3'
miRNA:   3'- -UGGCGGUGGCGcGCGGuUGUCGCGGg -5'
16179 5' -63.1 NC_004065.1 + 170309 0.81 0.092481
Target:  5'- gACgGUCGCCGUGCGCCGcggccgcuCGGCGCCCu -3'
miRNA:   3'- -UGgCGGUGGCGCGCGGUu-------GUCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.