Results 21 - 40 of 568 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16179 | 5' | -63.1 | NC_004065.1 | + | 159915 | 0.76 | 0.213171 |
Target: 5'- cGCCGCCGCCGC-CGCUGcCGGUGCUg -3' miRNA: 3'- -UGGCGGUGGCGcGCGGUuGUCGCGGg -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 155431 | 0.76 | 0.20221 |
Target: 5'- gGCCGCCACCGC-CaCCGACGGCaccaacugucccugGCCCc -3' miRNA: 3'- -UGGCGGUGGCGcGcGGUUGUCG--------------CGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 200057 | 0.8 | 0.120977 |
Target: 5'- cGCCGCCGCCGC-CGCCAGCaccGGUcCCCg -3' miRNA: 3'- -UGGCGGUGGCGcGCGGUUG---UCGcGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 184487 | 0.83 | 0.075883 |
Target: 5'- gGCUGCCGCCGC-CGCC-GCGGCGCCg -3' miRNA: 3'- -UGGCGGUGGCGcGCGGuUGUCGCGGg -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 61278 | 0.74 | 0.278847 |
Target: 5'- aACCG--GCCGCGaaCGCCAauucuucagacGCAGCGCCCg -3' miRNA: 3'- -UGGCggUGGCGC--GCGGU-----------UGUCGCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 116715 | 0.75 | 0.249699 |
Target: 5'- cCCGCguCCgGCGCGCgAGCGGCgucGCCCg -3' miRNA: 3'- uGGCGguGG-CGCGCGgUUGUCG---CGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 102795 | 0.77 | 0.189971 |
Target: 5'- cCCGCCACCGCGC-CCGauccucGCGGcCGCCg -3' miRNA: 3'- uGGCGGUGGCGCGcGGU------UGUC-GCGGg -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 66543 | 0.83 | 0.074021 |
Target: 5'- cGCCGCCACCgGCGcCGCCGACGGaGCUCg -3' miRNA: 3'- -UGGCGGUGG-CGC-GCGGUUGUCgCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 161265 | 0.75 | 0.24418 |
Target: 5'- gGCCGCCagcACCGcCGCGauguccgaguCCGGCAGCGaCCCc -3' miRNA: 3'- -UGGCGG---UGGC-GCGC----------GGUUGUCGC-GGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 99664 | 0.84 | 0.060626 |
Target: 5'- aGCCGgCGgCGCgGCGCCGACAGCGUCCg -3' miRNA: 3'- -UGGCgGUgGCG-CGCGGUUGUCGCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 173312 | 0.77 | 0.194426 |
Target: 5'- uGCCGCCGCCGC-CGCCGcuGCGGCGg-- -3' miRNA: 3'- -UGGCGGUGGCGcGCGGU--UGUCGCggg -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 95166 | 0.76 | 0.218093 |
Target: 5'- cGCCGCCGCCGUGCaggGUC--CAGgGCCCg -3' miRNA: 3'- -UGGCGGUGGCGCG---CGGuuGUCgCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 161454 | 0.78 | 0.165085 |
Target: 5'- cGCCGCCGCCGCGuUGCuCGcCAG-GCCCa -3' miRNA: 3'- -UGGCGGUGGCGC-GCG-GUuGUCgCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 91484 | 0.8 | 0.122154 |
Target: 5'- uCCGCCGCCGCucgugccgcguucgaGCGCCAACAGC-CCg -3' miRNA: 3'- uGGCGGUGGCG---------------CGCGGUUGUCGcGGg -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 152575 | 0.81 | 0.099552 |
Target: 5'- cGCCGCuugguguacggCACCGCGUcgucguccGUCAGCAGCGCCCg -3' miRNA: 3'- -UGGCG-----------GUGGCGCG--------CGGUUGUCGCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 75872 | 0.82 | 0.081743 |
Target: 5'- cGCCGCCGCCGC-CGCCGcCAcCGCCCg -3' miRNA: 3'- -UGGCGGUGGCGcGCGGUuGUcGCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 128147 | 0.74 | 0.28748 |
Target: 5'- aGCCGCC-CCG-GCGUCGucgucugcggcggcgAUAGCGCCCc -3' miRNA: 3'- -UGGCGGuGGCgCGCGGU---------------UGUCGCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 63881 | 0.74 | 0.278847 |
Target: 5'- cGCCGCUGCCGCcgGCGCCGACGucucUGCCg -3' miRNA: 3'- -UGGCGGUGGCG--CGCGGUUGUc---GCGGg -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 205510 | 0.74 | 0.271017 |
Target: 5'- uGCCGCCGCCaucuuggggccgGCGCucaggGCCGGCGgcggugccaucuacGCGCCCa -3' miRNA: 3'- -UGGCGGUGG------------CGCG-----CGGUUGU--------------CGCGGG- -5' |
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16179 | 5' | -63.1 | NC_004065.1 | + | 130477 | 0.75 | 0.25532 |
Target: 5'- gGCCGuCCGCCGCgGCGagaCGGgAGCGCCg -3' miRNA: 3'- -UGGC-GGUGGCG-CGCg--GUUgUCGCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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