miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1618 3' -55.6 NC_001347.2 + 95099 0.66 0.981635
Target:  5'- aCAGGcGCCCGaggCGUCGcacAUGACGUCu -3'
miRNA:   3'- -GUCU-UGGGCgcaGCAGC---UGCUGCAGc -5'
1618 3' -55.6 NC_001347.2 + 34180 0.66 0.981635
Target:  5'- --uAAUCCGCaccuGUCGUCGAC-AUGUCGc -3'
miRNA:   3'- gucUUGGGCG----CAGCAGCUGcUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 85572 0.66 0.979607
Target:  5'- gCAGaAACUCGCGU-GcCGACGGgGUCu -3'
miRNA:   3'- -GUC-UUGGGCGCAgCaGCUGCUgCAGc -5'
1618 3' -55.6 NC_001347.2 + 158696 0.66 0.979607
Target:  5'- aCAGAccGCCUGCcaCGUCGGCGGCc--- -3'
miRNA:   3'- -GUCU--UGGGCGcaGCAGCUGCUGcagc -5'
1618 3' -55.6 NC_001347.2 + 12792 0.66 0.979607
Target:  5'- cCAGGccgGCCgGCGUuuucacuacgcCGUgGACGACGcCGa -3'
miRNA:   3'- -GUCU---UGGgCGCA-----------GCAgCUGCUGCaGC- -5'
1618 3' -55.6 NC_001347.2 + 1853 0.66 0.977419
Target:  5'- ----cCCCGCGUCGcugcUGACGgccguGCGUCGg -3'
miRNA:   3'- gucuuGGGCGCAGCa---GCUGC-----UGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 99562 0.66 0.977419
Target:  5'- aCAGcuuguGACCCGCGcUCGUCGuCGggaGCG-CGg -3'
miRNA:   3'- -GUC-----UUGGGCGC-AGCAGCuGC---UGCaGC- -5'
1618 3' -55.6 NC_001347.2 + 110510 0.66 0.977419
Target:  5'- uCAGAGCCaGCGgCG-CGGCGGCGa-- -3'
miRNA:   3'- -GUCUUGGgCGCaGCaGCUGCUGCagc -5'
1618 3' -55.6 NC_001347.2 + 151527 0.66 0.977419
Target:  5'- aAGAcgGCCUGCGaguUCGUCaAgGGCGUCa -3'
miRNA:   3'- gUCU--UGGGCGC---AGCAGcUgCUGCAGc -5'
1618 3' -55.6 NC_001347.2 + 97883 0.66 0.977191
Target:  5'- uCGGAagcaaaaACCa-CGUCGUCuuCGGCGUCGg -3'
miRNA:   3'- -GUCU-------UGGgcGCAGCAGcuGCUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 189344 0.66 0.975061
Target:  5'- uCAGAcGCCCGagcaGUCGACGcCGUCc -3'
miRNA:   3'- -GUCU-UGGGCgcagCAGCUGCuGCAGc -5'
1618 3' -55.6 NC_001347.2 + 142422 0.66 0.975061
Target:  5'- -cGcGCCCagugGCGUCGgcgCGGCGuccgGCGUCGg -3'
miRNA:   3'- guCuUGGG----CGCAGCa--GCUGC----UGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 67427 0.66 0.974321
Target:  5'- gGGAGCgaaagaagugacgaCgGCGaCGUCGACGACGgCGa -3'
miRNA:   3'- gUCUUG--------------GgCGCaGCAGCUGCUGCaGC- -5'
1618 3' -55.6 NC_001347.2 + 89303 0.66 0.97253
Target:  5'- gAG-ACCCGCGUCGUUcaGCGagagaGCGUCc -3'
miRNA:   3'- gUCuUGGGCGCAGCAGc-UGC-----UGCAGc -5'
1618 3' -55.6 NC_001347.2 + 78356 0.66 0.97253
Target:  5'- -cGGACCCgGCGUgGUgggaccCGGCGGCGcCGu -3'
miRNA:   3'- guCUUGGG-CGCAgCA------GCUGCUGCaGC- -5'
1618 3' -55.6 NC_001347.2 + 39417 0.66 0.97253
Target:  5'- cCAGuGCCCGC--UGUUGACGGCGcUCc -3'
miRNA:   3'- -GUCuUGGGCGcaGCAGCUGCUGC-AGc -5'
1618 3' -55.6 NC_001347.2 + 182214 0.66 0.969818
Target:  5'- gCGGG--CUGCGUCGccuUCGGUGACGUCGg -3'
miRNA:   3'- -GUCUugGGCGCAGC---AGCUGCUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 25131 0.66 0.969818
Target:  5'- --cGACCUGUcccaugcuucGUCGUCGACGcCGUUGu -3'
miRNA:   3'- gucUUGGGCG----------CAGCAGCUGCuGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 196572 0.66 0.969818
Target:  5'- --cAACCCGCGUCG-CGGCuACGcCa -3'
miRNA:   3'- gucUUGGGCGCAGCaGCUGcUGCaGc -5'
1618 3' -55.6 NC_001347.2 + 137713 0.67 0.96383
Target:  5'- gUAGAGCCgGCGUCGccacauUCGAUGGUGUaCGc -3'
miRNA:   3'- -GUCUUGGgCGCAGC------AGCUGCUGCA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.