Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 1618 | 3' | -55.6 | NC_001347.2 | + | 156854 | 0.7 | 0.885929 |
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Target: 5'- aGGAGCaCGUgaGUCGUCGGCGAggggUGUCGa -3' miRNA: 3'- gUCUUGgGCG--CAGCAGCUGCU----GCAGC- -5' |
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| 1618 | 3' | -55.6 | NC_001347.2 | + | 76132 | 0.7 | 0.872381 |
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Target: 5'- gAGAAaaagCCGCGUCaucUCGGCGGCGUaCGa -3' miRNA: 3'- gUCUUg---GGCGCAGc--AGCUGCUGCA-GC- -5' |
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| 1618 | 3' | -55.6 | NC_001347.2 | + | 208117 | 0.71 | 0.835172 |
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Target: 5'- gCGGAG-CCGCGUCGcUCGcCGGCGcUCGu -3' miRNA: 3'- -GUCUUgGGCGCAGC-AGCuGCUGC-AGC- -5' |
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| 1618 | 3' | -55.6 | NC_001347.2 | + | 182112 | 0.71 | 0.827201 |
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Target: 5'- cCAGAucguCCCGCGg-GUCuuCGACGUCGc -3' miRNA: 3'- -GUCUu---GGGCGCagCAGcuGCUGCAGC- -5' |
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| 1618 | 3' | -55.6 | NC_001347.2 | + | 153239 | 0.72 | 0.80235 |
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Target: 5'- -cGGGCgCGCGUCGgcCGGCGACGgCGg -3' miRNA: 3'- guCUUGgGCGCAGCa-GCUGCUGCaGC- -5' |
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| 1618 | 3' | -55.6 | NC_001347.2 | + | 76302 | 0.72 | 0.785069 |
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Target: 5'- aCAuGACCCa-GUUGUCGGCGAUGUCGc -3' miRNA: 3'- -GUcUUGGGcgCAGCAGCUGCUGCAGC- -5' |
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| 1618 | 3' | -55.6 | NC_001347.2 | + | 165064 | 0.73 | 0.721061 |
|
Target: 5'- gGGcAACCCGgGUCGaCGAUGGgGUCGg -3' miRNA: 3'- gUC-UUGGGCgCAGCaGCUGCUgCAGC- -5' |
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| 1618 | 3' | -55.6 | NC_001347.2 | + | 89734 | 0.79 | 0.43777 |
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Target: 5'- ---cACCCGcCGUCGUCGccuGCGGCGUCGg -3' miRNA: 3'- gucuUGGGC-GCAGCAGC---UGCUGCAGC- -5' |
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| 1618 | 3' | -55.6 | NC_001347.2 | + | 143056 | 1.08 | 0.007582 |
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Target: 5'- gCAGAACCCGCGUCGUCGACGACGUCGu -3' miRNA: 3'- -GUCUUGGGCGCAGCAGCUGCUGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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