miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1618 3' -55.6 NC_001347.2 + 143056 1.08 0.007582
Target:  5'- gCAGAACCCGCGUCGUCGACGACGUCGu -3'
miRNA:   3'- -GUCUUGGGCGCAGCAGCUGCUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 89734 0.79 0.43777
Target:  5'- ---cACCCGcCGUCGUCGccuGCGGCGUCGg -3'
miRNA:   3'- gucuUGGGC-GCAGCAGC---UGCUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 165064 0.73 0.721061
Target:  5'- gGGcAACCCGgGUCGaCGAUGGgGUCGg -3'
miRNA:   3'- gUC-UUGGGCgCAGCaGCUGCUgCAGC- -5'
1618 3' -55.6 NC_001347.2 + 153239 0.72 0.80235
Target:  5'- -cGGGCgCGCGUCGgcCGGCGACGgCGg -3'
miRNA:   3'- guCUUGgGCGCAGCa-GCUGCUGCaGC- -5'
1618 3' -55.6 NC_001347.2 + 76302 0.72 0.785069
Target:  5'- aCAuGACCCa-GUUGUCGGCGAUGUCGc -3'
miRNA:   3'- -GUcUUGGGcgCAGCAGCUGCUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 208117 0.71 0.835172
Target:  5'- gCGGAG-CCGCGUCGcUCGcCGGCGcUCGu -3'
miRNA:   3'- -GUCUUgGGCGCAGC-AGCuGCUGC-AGC- -5'
1618 3' -55.6 NC_001347.2 + 182112 0.71 0.827201
Target:  5'- cCAGAucguCCCGCGg-GUCuuCGACGUCGc -3'
miRNA:   3'- -GUCUu---GGGCGCagCAGcuGCUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 76132 0.7 0.872381
Target:  5'- gAGAAaaagCCGCGUCaucUCGGCGGCGUaCGa -3'
miRNA:   3'- gUCUUg---GGCGCAGc--AGCUGCUGCA-GC- -5'
1618 3' -55.6 NC_001347.2 + 156854 0.7 0.885929
Target:  5'- aGGAGCaCGUgaGUCGUCGGCGAggggUGUCGa -3'
miRNA:   3'- gUCUUGgGCG--CAGCAGCUGCU----GCAGC- -5'
1618 3' -55.6 NC_001347.2 + 26096 0.69 0.916175
Target:  5'- gGGAAaCCGCGUCGUCGGaaACGgagCGu -3'
miRNA:   3'- gUCUUgGGCGCAGCAGCUgcUGCa--GC- -5'
1618 3' -55.6 NC_001347.2 + 161649 0.69 0.916175
Target:  5'- --cGACCCGCGgCGUgGACGcgccguugGCGUCGc -3'
miRNA:   3'- gucUUGGGCGCaGCAgCUGC--------UGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 31584 0.69 0.921582
Target:  5'- uCAGGccAgCUGCGUCGUCaagGACGGCGUg- -3'
miRNA:   3'- -GUCU--UgGGCGCAGCAG---CUGCUGCAgc -5'
1618 3' -55.6 NC_001347.2 + 109379 0.69 0.8924
Target:  5'- aGGGugCCGCccagggCGaCGACGACGUCu -3'
miRNA:   3'- gUCUugGGCGca----GCaGCUGCUGCAGc -5'
1618 3' -55.6 NC_001347.2 + 112373 0.69 0.912827
Target:  5'- uGGAACCCGCGUgcccgccacuuccacCGUCGcuauUGACGUg- -3'
miRNA:   3'- gUCUUGGGCGCA---------------GCAGCu---GCUGCAgc -5'
1618 3' -55.6 NC_001347.2 + 142219 0.68 0.941037
Target:  5'- gAGAucCCCGCGUC--CGACGAUGUg- -3'
miRNA:   3'- gUCUu-GGGCGCAGcaGCUGCUGCAgc -5'
1618 3' -55.6 NC_001347.2 + 1959 0.68 0.94536
Target:  5'- gCGGGGCCgGCGaCGggGACGGCGgCGg -3'
miRNA:   3'- -GUCUUGGgCGCaGCagCUGCUGCaGC- -5'
1618 3' -55.6 NC_001347.2 + 7625 0.68 0.941037
Target:  5'- uCAGAgaccGCgCCGuCGUUGUUGACGAUGcCGc -3'
miRNA:   3'- -GUCU----UG-GGC-GCAGCAGCUGCUGCaGC- -5'
1618 3' -55.6 NC_001347.2 + 121216 0.68 0.941037
Target:  5'- cUAGAAguaaCUGaCGUCGUCGugGACGcCa -3'
miRNA:   3'- -GUCUUg---GGC-GCAGCAGCugCUGCaGc -5'
1618 3' -55.6 NC_001347.2 + 182508 0.68 0.936499
Target:  5'- aAGAAgCCGCGUCGgUCacagGACGGCGa-- -3'
miRNA:   3'- gUCUUgGGCGCAGC-AG----CUGCUGCagc -5'
1618 3' -55.6 NC_001347.2 + 88122 0.67 0.949469
Target:  5'- -cGAGCaCCGCGUCcacacCGcccacACGACGUCGg -3'
miRNA:   3'- guCUUG-GGCGCAGca---GC-----UGCUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.