Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1618 | 3' | -55.6 | NC_001347.2 | + | 88122 | 0.67 | 0.949469 |
Target: 5'- -cGAGCaCCGCGUCcacacCGcccacACGACGUCGg -3' miRNA: 3'- guCUUG-GGCGCAGca---GC-----UGCUGCAGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 94321 | 0.67 | 0.949469 |
Target: 5'- ---cGCCCacgGCGUCcUCGGCGuCGUCGg -3' miRNA: 3'- gucuUGGG---CGCAGcAGCUGCuGCAGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 124546 | 0.67 | 0.953368 |
Target: 5'- aCGGAcACCCuCGcCGguagaCGAUGACGUCGa -3' miRNA: 3'- -GUCU-UGGGcGCaGCa----GCUGCUGCAGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 35859 | 0.67 | 0.953368 |
Target: 5'- gAGAACCUGUacGUacaCGcCGACGACGUgGa -3' miRNA: 3'- gUCUUGGGCG--CA---GCaGCUGCUGCAgC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 193171 | 0.67 | 0.953368 |
Target: 5'- -uGGGCaCGCG-CGUCGGCcGCGUCGc -3' miRNA: 3'- guCUUGgGCGCaGCAGCUGcUGCAGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 24699 | 0.67 | 0.957059 |
Target: 5'- aGGAGCCcCGCGaggUGUUGACGuCGUUu -3' miRNA: 3'- gUCUUGG-GCGCa--GCAGCUGCuGCAGc -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 166828 | 0.67 | 0.957059 |
Target: 5'- aGGuGCUCGagaGUCGU-GGCGAUGUCGa -3' miRNA: 3'- gUCuUGGGCg--CAGCAgCUGCUGCAGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 192291 | 0.67 | 0.957059 |
Target: 5'- cCGGGcCCCGCGUUcaaGACGGCGUg- -3' miRNA: 3'- -GUCUuGGGCGCAGcagCUGCUGCAgc -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 137713 | 0.67 | 0.96383 |
Target: 5'- gUAGAGCCgGCGUCGccacauUCGAUGGUGUaCGc -3' miRNA: 3'- -GUCUUGGgCGCAGC------AGCUGCUGCA-GC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 109456 | 0.67 | 0.960545 |
Target: 5'- aAGAcgcCCCGCGUCaccggCGGCGGCGcCa -3' miRNA: 3'- gUCUu--GGGCGCAGca---GCUGCUGCaGc -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 142422 | 0.66 | 0.975061 |
Target: 5'- -cGcGCCCagugGCGUCGgcgCGGCGuccgGCGUCGg -3' miRNA: 3'- guCuUGGG----CGCAGCa--GCUGC----UGCAGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 97883 | 0.66 | 0.977191 |
Target: 5'- uCGGAagcaaaaACCa-CGUCGUCuuCGGCGUCGg -3' miRNA: 3'- -GUCU-------UGGgcGCAGCAGcuGCUGCAGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 99562 | 0.66 | 0.977419 |
Target: 5'- aCAGcuuguGACCCGCGcUCGUCGuCGggaGCG-CGg -3' miRNA: 3'- -GUC-----UUGGGCGC-AGCAGCuGC---UGCaGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 1853 | 0.66 | 0.977419 |
Target: 5'- ----cCCCGCGUCGcugcUGACGgccguGCGUCGg -3' miRNA: 3'- gucuuGGGCGCAGCa---GCUGC-----UGCAGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 85572 | 0.66 | 0.979607 |
Target: 5'- gCAGaAACUCGCGU-GcCGACGGgGUCu -3' miRNA: 3'- -GUC-UUGGGCGCAgCaGCUGCUgCAGc -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 189344 | 0.66 | 0.975061 |
Target: 5'- uCAGAcGCCCGagcaGUCGACGcCGUCc -3' miRNA: 3'- -GUCU-UGGGCgcagCAGCUGCuGCAGc -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 89303 | 0.66 | 0.97253 |
Target: 5'- gAG-ACCCGCGUCGUUcaGCGagagaGCGUCc -3' miRNA: 3'- gUCuUGGGCGCAGCAGc-UGC-----UGCAGc -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 78356 | 0.66 | 0.97253 |
Target: 5'- -cGGACCCgGCGUgGUgggaccCGGCGGCGcCGu -3' miRNA: 3'- guCUUGGG-CGCAgCA------GCUGCUGCaGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 67427 | 0.66 | 0.974321 |
Target: 5'- gGGAGCgaaagaagugacgaCgGCGaCGUCGACGACGgCGa -3' miRNA: 3'- gUCUUG--------------GgCGCaGCAGCUGCUGCaGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 182214 | 0.66 | 0.969818 |
Target: 5'- gCGGG--CUGCGUCGccuUCGGUGACGUCGg -3' miRNA: 3'- -GUCUugGGCGCAGC---AGCUGCUGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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