miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1618 3' -55.6 NC_001347.2 + 90243 0.67 0.949469
Target:  5'- uCGGAGC--GCGUCGUcuaCGACGGCGUUu -3'
miRNA:   3'- -GUCUUGggCGCAGCA---GCUGCUGCAGc -5'
1618 3' -55.6 NC_001347.2 + 94321 0.67 0.949469
Target:  5'- ---cGCCCacgGCGUCcUCGGCGuCGUCGg -3'
miRNA:   3'- gucuUGGG---CGCAGcAGCUGCuGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 35859 0.67 0.953368
Target:  5'- gAGAACCUGUacGUacaCGcCGACGACGUgGa -3'
miRNA:   3'- gUCUUGGGCG--CA---GCaGCUGCUGCAgC- -5'
1618 3' -55.6 NC_001347.2 + 193171 0.67 0.953368
Target:  5'- -uGGGCaCGCG-CGUCGGCcGCGUCGc -3'
miRNA:   3'- guCUUGgGCGCaGCAGCUGcUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 124546 0.67 0.953368
Target:  5'- aCGGAcACCCuCGcCGguagaCGAUGACGUCGa -3'
miRNA:   3'- -GUCU-UGGGcGCaGCa----GCUGCUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 166828 0.67 0.957059
Target:  5'- aGGuGCUCGagaGUCGU-GGCGAUGUCGa -3'
miRNA:   3'- gUCuUGGGCg--CAGCAgCUGCUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 192291 0.67 0.957059
Target:  5'- cCGGGcCCCGCGUUcaaGACGGCGUg- -3'
miRNA:   3'- -GUCUuGGGCGCAGcagCUGCUGCAgc -5'
1618 3' -55.6 NC_001347.2 + 24699 0.67 0.957059
Target:  5'- aGGAGCCcCGCGaggUGUUGACGuCGUUu -3'
miRNA:   3'- gUCUUGG-GCGCa--GCAGCUGCuGCAGc -5'
1618 3' -55.6 NC_001347.2 + 109456 0.67 0.960545
Target:  5'- aAGAcgcCCCGCGUCaccggCGGCGGCGcCa -3'
miRNA:   3'- gUCUu--GGGCGCAGca---GCUGCUGCaGc -5'
1618 3' -55.6 NC_001347.2 + 137713 0.67 0.96383
Target:  5'- gUAGAGCCgGCGUCGccacauUCGAUGGUGUaCGc -3'
miRNA:   3'- -GUCUUGGgCGCAGC------AGCUGCUGCA-GC- -5'
1618 3' -55.6 NC_001347.2 + 196572 0.66 0.969818
Target:  5'- --cAACCCGCGUCG-CGGCuACGcCa -3'
miRNA:   3'- gucUUGGGCGCAGCaGCUGcUGCaGc -5'
1618 3' -55.6 NC_001347.2 + 25131 0.66 0.969818
Target:  5'- --cGACCUGUcccaugcuucGUCGUCGACGcCGUUGu -3'
miRNA:   3'- gucUUGGGCG----------CAGCAGCUGCuGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 182214 0.66 0.969818
Target:  5'- gCGGG--CUGCGUCGccuUCGGUGACGUCGg -3'
miRNA:   3'- -GUCUugGGCGCAGC---AGCUGCUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 89303 0.66 0.97253
Target:  5'- gAG-ACCCGCGUCGUUcaGCGagagaGCGUCc -3'
miRNA:   3'- gUCuUGGGCGCAGCAGc-UGC-----UGCAGc -5'
1618 3' -55.6 NC_001347.2 + 39417 0.66 0.97253
Target:  5'- cCAGuGCCCGC--UGUUGACGGCGcUCc -3'
miRNA:   3'- -GUCuUGGGCGcaGCAGCUGCUGC-AGc -5'
1618 3' -55.6 NC_001347.2 + 78356 0.66 0.97253
Target:  5'- -cGGACCCgGCGUgGUgggaccCGGCGGCGcCGu -3'
miRNA:   3'- guCUUGGG-CGCAgCA------GCUGCUGCaGC- -5'
1618 3' -55.6 NC_001347.2 + 67427 0.66 0.974321
Target:  5'- gGGAGCgaaagaagugacgaCgGCGaCGUCGACGACGgCGa -3'
miRNA:   3'- gUCUUG--------------GgCGCaGCAGCUGCUGCaGC- -5'
1618 3' -55.6 NC_001347.2 + 189344 0.66 0.975061
Target:  5'- uCAGAcGCCCGagcaGUCGACGcCGUCc -3'
miRNA:   3'- -GUCU-UGGGCgcagCAGCUGCuGCAGc -5'
1618 3' -55.6 NC_001347.2 + 142422 0.66 0.975061
Target:  5'- -cGcGCCCagugGCGUCGgcgCGGCGuccgGCGUCGg -3'
miRNA:   3'- guCuUGGG----CGCAGCa--GCUGC----UGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 97883 0.66 0.977191
Target:  5'- uCGGAagcaaaaACCa-CGUCGUCuuCGGCGUCGg -3'
miRNA:   3'- -GUCU-------UGGgcGCAGCAGcuGCUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.