Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1618 | 3' | -55.6 | NC_001347.2 | + | 109456 | 0.67 | 0.960545 |
Target: 5'- aAGAcgcCCCGCGUCaccggCGGCGGCGcCa -3' miRNA: 3'- gUCUu--GGGCGCAGca---GCUGCUGCaGc -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 192291 | 0.67 | 0.957059 |
Target: 5'- cCGGGcCCCGCGUUcaaGACGGCGUg- -3' miRNA: 3'- -GUCUuGGGCGCAGcagCUGCUGCAgc -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 166828 | 0.67 | 0.957059 |
Target: 5'- aGGuGCUCGagaGUCGU-GGCGAUGUCGa -3' miRNA: 3'- gUCuUGGGCg--CAGCAgCUGCUGCAGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 24699 | 0.67 | 0.957059 |
Target: 5'- aGGAGCCcCGCGaggUGUUGACGuCGUUu -3' miRNA: 3'- gUCUUGG-GCGCa--GCAGCUGCuGCAGc -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 193171 | 0.67 | 0.953368 |
Target: 5'- -uGGGCaCGCG-CGUCGGCcGCGUCGc -3' miRNA: 3'- guCUUGgGCGCaGCAGCUGcUGCAGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 35859 | 0.67 | 0.953368 |
Target: 5'- gAGAACCUGUacGUacaCGcCGACGACGUgGa -3' miRNA: 3'- gUCUUGGGCG--CA---GCaGCUGCUGCAgC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 124546 | 0.67 | 0.953368 |
Target: 5'- aCGGAcACCCuCGcCGguagaCGAUGACGUCGa -3' miRNA: 3'- -GUCU-UGGGcGCaGCa----GCUGCUGCAGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 90243 | 0.67 | 0.949469 |
Target: 5'- uCGGAGC--GCGUCGUcuaCGACGGCGUUu -3' miRNA: 3'- -GUCUUGggCGCAGCA---GCUGCUGCAGc -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 88122 | 0.67 | 0.949469 |
Target: 5'- -cGAGCaCCGCGUCcacacCGcccacACGACGUCGg -3' miRNA: 3'- guCUUG-GGCGCAGca---GC-----UGCUGCAGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 94321 | 0.67 | 0.949469 |
Target: 5'- ---cGCCCacgGCGUCcUCGGCGuCGUCGg -3' miRNA: 3'- gucuUGGG---CGCAGcAGCUGCuGCAGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 1959 | 0.68 | 0.94536 |
Target: 5'- gCGGGGCCgGCGaCGggGACGGCGgCGg -3' miRNA: 3'- -GUCUUGGgCGCaGCagCUGCUGCaGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 142219 | 0.68 | 0.941037 |
Target: 5'- gAGAucCCCGCGUC--CGACGAUGUg- -3' miRNA: 3'- gUCUu-GGGCGCAGcaGCUGCUGCAgc -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 7625 | 0.68 | 0.941037 |
Target: 5'- uCAGAgaccGCgCCGuCGUUGUUGACGAUGcCGc -3' miRNA: 3'- -GUCU----UG-GGC-GCAGCAGCUGCUGCaGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 121216 | 0.68 | 0.941037 |
Target: 5'- cUAGAAguaaCUGaCGUCGUCGugGACGcCa -3' miRNA: 3'- -GUCUUg---GGC-GCAGCAGCugCUGCaGc -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 182508 | 0.68 | 0.936499 |
Target: 5'- aAGAAgCCGCGUCGgUCacagGACGGCGa-- -3' miRNA: 3'- gUCUUgGGCGCAGC-AG----CUGCUGCagc -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 31584 | 0.69 | 0.921582 |
Target: 5'- uCAGGccAgCUGCGUCGUCaagGACGGCGUg- -3' miRNA: 3'- -GUCU--UgGGCGCAGCAG---CUGCUGCAgc -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 26096 | 0.69 | 0.916175 |
Target: 5'- gGGAAaCCGCGUCGUCGGaaACGgagCGu -3' miRNA: 3'- gUCUUgGGCGCAGCAGCUgcUGCa--GC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 161649 | 0.69 | 0.916175 |
Target: 5'- --cGACCCGCGgCGUgGACGcgccguugGCGUCGc -3' miRNA: 3'- gucUUGGGCGCaGCAgCUGC--------UGCAGC- -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 112373 | 0.69 | 0.912827 |
Target: 5'- uGGAACCCGCGUgcccgccacuuccacCGUCGcuauUGACGUg- -3' miRNA: 3'- gUCUUGGGCGCA---------------GCAGCu---GCUGCAgc -5' |
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1618 | 3' | -55.6 | NC_001347.2 | + | 109379 | 0.69 | 0.8924 |
Target: 5'- aGGGugCCGCccagggCGaCGACGACGUCu -3' miRNA: 3'- gUCUugGGCGca----GCaGCUGCUGCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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