miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1618 3' -55.6 NC_001347.2 + 1853 0.66 0.977419
Target:  5'- ----cCCCGCGUCGcugcUGACGgccguGCGUCGg -3'
miRNA:   3'- gucuuGGGCGCAGCa---GCUGC-----UGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 1959 0.68 0.94536
Target:  5'- gCGGGGCCgGCGaCGggGACGGCGgCGg -3'
miRNA:   3'- -GUCUUGGgCGCaGCagCUGCUGCaGC- -5'
1618 3' -55.6 NC_001347.2 + 7625 0.68 0.941037
Target:  5'- uCAGAgaccGCgCCGuCGUUGUUGACGAUGcCGc -3'
miRNA:   3'- -GUCU----UG-GGC-GCAGCAGCUGCUGCaGC- -5'
1618 3' -55.6 NC_001347.2 + 12792 0.66 0.979607
Target:  5'- cCAGGccgGCCgGCGUuuucacuacgcCGUgGACGACGcCGa -3'
miRNA:   3'- -GUCU---UGGgCGCA-----------GCAgCUGCUGCaGC- -5'
1618 3' -55.6 NC_001347.2 + 24699 0.67 0.957059
Target:  5'- aGGAGCCcCGCGaggUGUUGACGuCGUUu -3'
miRNA:   3'- gUCUUGG-GCGCa--GCAGCUGCuGCAGc -5'
1618 3' -55.6 NC_001347.2 + 25131 0.66 0.969818
Target:  5'- --cGACCUGUcccaugcuucGUCGUCGACGcCGUUGu -3'
miRNA:   3'- gucUUGGGCG----------CAGCAGCUGCuGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 26096 0.69 0.916175
Target:  5'- gGGAAaCCGCGUCGUCGGaaACGgagCGu -3'
miRNA:   3'- gUCUUgGGCGCAGCAGCUgcUGCa--GC- -5'
1618 3' -55.6 NC_001347.2 + 31584 0.69 0.921582
Target:  5'- uCAGGccAgCUGCGUCGUCaagGACGGCGUg- -3'
miRNA:   3'- -GUCU--UgGGCGCAGCAG---CUGCUGCAgc -5'
1618 3' -55.6 NC_001347.2 + 34180 0.66 0.981635
Target:  5'- --uAAUCCGCaccuGUCGUCGAC-AUGUCGc -3'
miRNA:   3'- gucUUGGGCG----CAGCAGCUGcUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 35859 0.67 0.953368
Target:  5'- gAGAACCUGUacGUacaCGcCGACGACGUgGa -3'
miRNA:   3'- gUCUUGGGCG--CA---GCaGCUGCUGCAgC- -5'
1618 3' -55.6 NC_001347.2 + 39417 0.66 0.97253
Target:  5'- cCAGuGCCCGC--UGUUGACGGCGcUCc -3'
miRNA:   3'- -GUCuUGGGCGcaGCAGCUGCUGC-AGc -5'
1618 3' -55.6 NC_001347.2 + 67427 0.66 0.974321
Target:  5'- gGGAGCgaaagaagugacgaCgGCGaCGUCGACGACGgCGa -3'
miRNA:   3'- gUCUUG--------------GgCGCaGCAGCUGCUGCaGC- -5'
1618 3' -55.6 NC_001347.2 + 76132 0.7 0.872381
Target:  5'- gAGAAaaagCCGCGUCaucUCGGCGGCGUaCGa -3'
miRNA:   3'- gUCUUg---GGCGCAGc--AGCUGCUGCA-GC- -5'
1618 3' -55.6 NC_001347.2 + 76302 0.72 0.785069
Target:  5'- aCAuGACCCa-GUUGUCGGCGAUGUCGc -3'
miRNA:   3'- -GUcUUGGGcgCAGCAGCUGCUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 78356 0.66 0.97253
Target:  5'- -cGGACCCgGCGUgGUgggaccCGGCGGCGcCGu -3'
miRNA:   3'- guCUUGGG-CGCAgCA------GCUGCUGCaGC- -5'
1618 3' -55.6 NC_001347.2 + 85572 0.66 0.979607
Target:  5'- gCAGaAACUCGCGU-GcCGACGGgGUCu -3'
miRNA:   3'- -GUC-UUGGGCGCAgCaGCUGCUgCAGc -5'
1618 3' -55.6 NC_001347.2 + 88122 0.67 0.949469
Target:  5'- -cGAGCaCCGCGUCcacacCGcccacACGACGUCGg -3'
miRNA:   3'- guCUUG-GGCGCAGca---GC-----UGCUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 89303 0.66 0.97253
Target:  5'- gAG-ACCCGCGUCGUUcaGCGagagaGCGUCc -3'
miRNA:   3'- gUCuUGGGCGCAGCAGc-UGC-----UGCAGc -5'
1618 3' -55.6 NC_001347.2 + 89734 0.79 0.43777
Target:  5'- ---cACCCGcCGUCGUCGccuGCGGCGUCGg -3'
miRNA:   3'- gucuUGGGC-GCAGCAGC---UGCUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 90243 0.67 0.949469
Target:  5'- uCGGAGC--GCGUCGUcuaCGACGGCGUUu -3'
miRNA:   3'- -GUCUUGggCGCAGCA---GCUGCUGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.