miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1618 3' -55.6 NC_001347.2 + 94321 0.67 0.949469
Target:  5'- ---cGCCCacgGCGUCcUCGGCGuCGUCGg -3'
miRNA:   3'- gucuUGGG---CGCAGcAGCUGCuGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 95099 0.66 0.981635
Target:  5'- aCAGGcGCCCGaggCGUCGcacAUGACGUCu -3'
miRNA:   3'- -GUCU-UGGGCgcaGCAGC---UGCUGCAGc -5'
1618 3' -55.6 NC_001347.2 + 97883 0.66 0.977191
Target:  5'- uCGGAagcaaaaACCa-CGUCGUCuuCGGCGUCGg -3'
miRNA:   3'- -GUCU-------UGGgcGCAGCAGcuGCUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 99562 0.66 0.977419
Target:  5'- aCAGcuuguGACCCGCGcUCGUCGuCGggaGCG-CGg -3'
miRNA:   3'- -GUC-----UUGGGCGC-AGCAGCuGC---UGCaGC- -5'
1618 3' -55.6 NC_001347.2 + 109379 0.69 0.8924
Target:  5'- aGGGugCCGCccagggCGaCGACGACGUCu -3'
miRNA:   3'- gUCUugGGCGca----GCaGCUGCUGCAGc -5'
1618 3' -55.6 NC_001347.2 + 109456 0.67 0.960545
Target:  5'- aAGAcgcCCCGCGUCaccggCGGCGGCGcCa -3'
miRNA:   3'- gUCUu--GGGCGCAGca---GCUGCUGCaGc -5'
1618 3' -55.6 NC_001347.2 + 110510 0.66 0.977419
Target:  5'- uCAGAGCCaGCGgCG-CGGCGGCGa-- -3'
miRNA:   3'- -GUCUUGGgCGCaGCaGCUGCUGCagc -5'
1618 3' -55.6 NC_001347.2 + 112373 0.69 0.912827
Target:  5'- uGGAACCCGCGUgcccgccacuuccacCGUCGcuauUGACGUg- -3'
miRNA:   3'- gUCUUGGGCGCA---------------GCAGCu---GCUGCAgc -5'
1618 3' -55.6 NC_001347.2 + 121216 0.68 0.941037
Target:  5'- cUAGAAguaaCUGaCGUCGUCGugGACGcCa -3'
miRNA:   3'- -GUCUUg---GGC-GCAGCAGCugCUGCaGc -5'
1618 3' -55.6 NC_001347.2 + 124546 0.67 0.953368
Target:  5'- aCGGAcACCCuCGcCGguagaCGAUGACGUCGa -3'
miRNA:   3'- -GUCU-UGGGcGCaGCa----GCUGCUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 137713 0.67 0.96383
Target:  5'- gUAGAGCCgGCGUCGccacauUCGAUGGUGUaCGc -3'
miRNA:   3'- -GUCUUGGgCGCAGC------AGCUGCUGCA-GC- -5'
1618 3' -55.6 NC_001347.2 + 142219 0.68 0.941037
Target:  5'- gAGAucCCCGCGUC--CGACGAUGUg- -3'
miRNA:   3'- gUCUu-GGGCGCAGcaGCUGCUGCAgc -5'
1618 3' -55.6 NC_001347.2 + 142422 0.66 0.975061
Target:  5'- -cGcGCCCagugGCGUCGgcgCGGCGuccgGCGUCGg -3'
miRNA:   3'- guCuUGGG----CGCAGCa--GCUGC----UGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 143056 1.08 0.007582
Target:  5'- gCAGAACCCGCGUCGUCGACGACGUCGu -3'
miRNA:   3'- -GUCUUGGGCGCAGCAGCUGCUGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 151527 0.66 0.977419
Target:  5'- aAGAcgGCCUGCGaguUCGUCaAgGGCGUCa -3'
miRNA:   3'- gUCU--UGGGCGC---AGCAGcUgCUGCAGc -5'
1618 3' -55.6 NC_001347.2 + 153239 0.72 0.80235
Target:  5'- -cGGGCgCGCGUCGgcCGGCGACGgCGg -3'
miRNA:   3'- guCUUGgGCGCAGCa-GCUGCUGCaGC- -5'
1618 3' -55.6 NC_001347.2 + 156854 0.7 0.885929
Target:  5'- aGGAGCaCGUgaGUCGUCGGCGAggggUGUCGa -3'
miRNA:   3'- gUCUUGgGCG--CAGCAGCUGCU----GCAGC- -5'
1618 3' -55.6 NC_001347.2 + 158696 0.66 0.979607
Target:  5'- aCAGAccGCCUGCcaCGUCGGCGGCc--- -3'
miRNA:   3'- -GUCU--UGGGCGcaGCAGCUGCUGcagc -5'
1618 3' -55.6 NC_001347.2 + 161649 0.69 0.916175
Target:  5'- --cGACCCGCGgCGUgGACGcgccguugGCGUCGc -3'
miRNA:   3'- gucUUGGGCGCaGCAgCUGC--------UGCAGC- -5'
1618 3' -55.6 NC_001347.2 + 165064 0.73 0.721061
Target:  5'- gGGcAACCCGgGUCGaCGAUGGgGUCGg -3'
miRNA:   3'- gUC-UUGGGCgCAGCaGCUGCUgCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.