miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1618 5' -53.3 NC_001347.2 + 155898 0.66 0.991492
Target:  5'- aGUCGGCGcCGGguaaauaaaUCGGCGgUGGCGucgguGCGa -3'
miRNA:   3'- -CAGUUGCaGUC---------AGCCGU-AUCGCu----CGC- -5'
1618 5' -53.3 NC_001347.2 + 88147 0.66 0.991492
Target:  5'- -aCGACGUCGGcacagCGGgGU-GCGGGCc -3'
miRNA:   3'- caGUUGCAGUCa----GCCgUAuCGCUCGc -5'
1618 5' -53.3 NC_001347.2 + 142431 0.66 0.990313
Target:  5'- --uGGCGUCGGcgCGGCGUccGGCGucggggguGGCGg -3'
miRNA:   3'- cagUUGCAGUCa-GCCGUA--UCGC--------UCGC- -5'
1618 5' -53.3 NC_001347.2 + 203168 0.66 0.98901
Target:  5'- -aCGACGUCAGgggauucaCGGUAUuuagccaugcAGCGuGCGg -3'
miRNA:   3'- caGUUGCAGUCa-------GCCGUA----------UCGCuCGC- -5'
1618 5' -53.3 NC_001347.2 + 108587 0.66 0.98901
Target:  5'- aUCAACGUgCAccacuacccGUCGGCGgc-CGAGCGc -3'
miRNA:   3'- cAGUUGCA-GU---------CAGCCGUaucGCUCGC- -5'
1618 5' -53.3 NC_001347.2 + 195267 0.66 0.988872
Target:  5'- -aCGACGUCAGcgaguacguguuuUCGGgcCGUAGCGuGCu -3'
miRNA:   3'- caGUUGCAGUC-------------AGCC--GUAUCGCuCGc -5'
1618 5' -53.3 NC_001347.2 + 173525 0.66 0.985998
Target:  5'- -aCAGCGgcaAGUC-GCGUGGCG-GCGg -3'
miRNA:   3'- caGUUGCag-UCAGcCGUAUCGCuCGC- -5'
1618 5' -53.3 NC_001347.2 + 197549 0.66 0.985998
Target:  5'- -gCAGCGU-GGcCGGCGUGGCG-GCc -3'
miRNA:   3'- caGUUGCAgUCaGCCGUAUCGCuCGc -5'
1618 5' -53.3 NC_001347.2 + 184942 0.66 0.984273
Target:  5'- cGUCugcagcuCGUCGGcCGGCGUgGGCGGcucGCGg -3'
miRNA:   3'- -CAGuu-----GCAGUCaGCCGUA-UCGCU---CGC- -5'
1618 5' -53.3 NC_001347.2 + 59126 0.66 0.984273
Target:  5'- aUCAGag-CAG-CGGCGgGGCGAGCa -3'
miRNA:   3'- cAGUUgcaGUCaGCCGUaUCGCUCGc -5'
1618 5' -53.3 NC_001347.2 + 65856 0.67 0.978125
Target:  5'- -gCAGCGcCAGcggcuggccuUCGGCAcgcUGGCGGGCc -3'
miRNA:   3'- caGUUGCaGUC----------AGCCGU---AUCGCUCGc -5'
1618 5' -53.3 NC_001347.2 + 97906 0.67 0.978125
Target:  5'- uUCGGCGUCGGgCGGC--GGCGguaacacacGGCGa -3'
miRNA:   3'- cAGUUGCAGUCaGCCGuaUCGC---------UCGC- -5'
1618 5' -53.3 NC_001347.2 + 174430 0.67 0.978125
Target:  5'- cGUC-GCGUCAG-CGGCAcGGUGcuGCGu -3'
miRNA:   3'- -CAGuUGCAGUCaGCCGUaUCGCu-CGC- -5'
1618 5' -53.3 NC_001347.2 + 140033 0.67 0.975727
Target:  5'- -cCAGuCGUCGGcgCGGCAUcccAGCGccGGCGg -3'
miRNA:   3'- caGUU-GCAGUCa-GCCGUA---UCGC--UCGC- -5'
1618 5' -53.3 NC_001347.2 + 138642 0.67 0.973141
Target:  5'- -cCGACGUUAGUUGGC--GGUGAcGCa -3'
miRNA:   3'- caGUUGCAGUCAGCCGuaUCGCU-CGc -5'
1618 5' -53.3 NC_001347.2 + 143594 0.68 0.970074
Target:  5'- uUCAGCGUCAGUCuGGCcacacucaacgacauCGAGCGc -3'
miRNA:   3'- cAGUUGCAGUCAG-CCGuauc-----------GCUCGC- -5'
1618 5' -53.3 NC_001347.2 + 109467 0.69 0.94501
Target:  5'- cGUCAcCGgCGG-CGGCGccaUGGCGGGCGc -3'
miRNA:   3'- -CAGUuGCaGUCaGCCGU---AUCGCUCGC- -5'
1618 5' -53.3 NC_001347.2 + 85500 0.7 0.925538
Target:  5'- -gCAGCGguUCGGgCGGCuugAGCGGGCGc -3'
miRNA:   3'- caGUUGC--AGUCaGCCGua-UCGCUCGC- -5'
1618 5' -53.3 NC_001347.2 + 83004 0.7 0.902314
Target:  5'- uGUCAACGUCAG-CGuGCAucUAGUgcuGAGCa -3'
miRNA:   3'- -CAGUUGCAGUCaGC-CGU--AUCG---CUCGc -5'
1618 5' -53.3 NC_001347.2 + 212930 0.71 0.889319
Target:  5'- uUCAACGUUAccggCGGCAUAGUGGaccGCGg -3'
miRNA:   3'- cAGUUGCAGUca--GCCGUAUCGCU---CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.