miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16180 5' -54.4 NC_004065.1 + 132309 0.66 0.98215
Target:  5'- aGCU-GUCGUGCCUCcUGgacaGCCCggGCGg -3'
miRNA:   3'- -CGAcCAGCGCGGAGaAUa---UGGG--UGCa -5'
16180 5' -54.4 NC_004065.1 + 228431 0.66 0.980101
Target:  5'- --aGGUUGUgGCCg---AUACCCGCGUa -3'
miRNA:   3'- cgaCCAGCG-CGGagaaUAUGGGUGCA- -5'
16180 5' -54.4 NC_004065.1 + 122239 0.66 0.97765
Target:  5'- gGCgGGUCGUuccugucGCCgCUgcUGCCCGCGc -3'
miRNA:   3'- -CGaCCAGCG-------CGGaGAauAUGGGUGCa -5'
16180 5' -54.4 NC_004065.1 + 171465 0.66 0.976945
Target:  5'- cGCUGGaUCGCGCCgaacauccGCCCcaaGCGa -3'
miRNA:   3'- -CGACC-AGCGCGGagaaua--UGGG---UGCa -5'
16180 5' -54.4 NC_004065.1 + 1100 0.66 0.975486
Target:  5'- aGUUGGUaCGCGUCUCgu---CCC-CGUg -3'
miRNA:   3'- -CGACCA-GCGCGGAGaauauGGGuGCA- -5'
16180 5' -54.4 NC_004065.1 + 53857 0.67 0.970134
Target:  5'- cGCggcGGUCGCGCCggg-AUGgCCACu- -3'
miRNA:   3'- -CGa--CCAGCGCGGagaaUAUgGGUGca -5'
16180 5' -54.4 NC_004065.1 + 149759 0.67 0.967165
Target:  5'- cGCaGcUCGCGCgUCUUGcucuCCCACGUc -3'
miRNA:   3'- -CGaCcAGCGCGgAGAAUau--GGGUGCA- -5'
16180 5' -54.4 NC_004065.1 + 30495 0.67 0.963994
Target:  5'- gGCUGGagGCGCCcggCUgc-GCgCACGUg -3'
miRNA:   3'- -CGACCagCGCGGa--GAauaUGgGUGCA- -5'
16180 5' -54.4 NC_004065.1 + 124882 0.67 0.960615
Target:  5'- uGCccgGGUUGCGCUcCUcgaUGUGCgCCGCGUc -3'
miRNA:   3'- -CGa--CCAGCGCGGaGA---AUAUG-GGUGCA- -5'
16180 5' -54.4 NC_004065.1 + 181399 0.67 0.960615
Target:  5'- cGCUGGUCGCGCC-C--AUACUUcuCGUc -3'
miRNA:   3'- -CGACCAGCGCGGaGaaUAUGGGu-GCA- -5'
16180 5' -54.4 NC_004065.1 + 684 0.67 0.957022
Target:  5'- cGCUGGUCGagcgacCGCCcggguuUCgagAUGCCCGuCGUa -3'
miRNA:   3'- -CGACCAGC------GCGG------AGaa-UAUGGGU-GCA- -5'
16180 5' -54.4 NC_004065.1 + 200905 0.67 0.957022
Target:  5'- cGCUGGgCGaccgGCCUCccaagUGUcCCCACGUc -3'
miRNA:   3'- -CGACCaGCg---CGGAGa----AUAuGGGUGCA- -5'
16180 5' -54.4 NC_004065.1 + 198205 0.68 0.953213
Target:  5'- --aGGUCGCGCUccCUUuc-CCCACGg -3'
miRNA:   3'- cgaCCAGCGCGGa-GAAuauGGGUGCa -5'
16180 5' -54.4 NC_004065.1 + 100562 0.68 0.949182
Target:  5'- cGCUGGUgCGCuugcgGCUUUUUuccGCCCGCGg -3'
miRNA:   3'- -CGACCA-GCG-----CGGAGAAua-UGGGUGCa -5'
16180 5' -54.4 NC_004065.1 + 139821 0.68 0.935733
Target:  5'- cGCUGuGUUGCGCgCUCggAUcACUCugGUg -3'
miRNA:   3'- -CGAC-CAGCGCG-GAGaaUA-UGGGugCA- -5'
16180 5' -54.4 NC_004065.1 + 229294 0.68 0.930792
Target:  5'- cGCUGGUCGCGUUgcguc-ACCgGCGUc -3'
miRNA:   3'- -CGACCAGCGCGGagaauaUGGgUGCA- -5'
16180 5' -54.4 NC_004065.1 + 74880 0.69 0.914582
Target:  5'- gGCaGGUCGCaGCCgacCUcGUACUCGCGg -3'
miRNA:   3'- -CGaCCAGCG-CGGa--GAaUAUGGGUGCa -5'
16180 5' -54.4 NC_004065.1 + 25213 0.69 0.914582
Target:  5'- cCUGGUgGCGCCg---AUGCCgACGa -3'
miRNA:   3'- cGACCAgCGCGGagaaUAUGGgUGCa -5'
16180 5' -54.4 NC_004065.1 + 152889 0.69 0.914582
Target:  5'- uGCgGGUCGCGCCgcaggCagAUGCUgACGa -3'
miRNA:   3'- -CGaCCAGCGCGGa----GaaUAUGGgUGCa -5'
16180 5' -54.4 NC_004065.1 + 130816 0.7 0.889768
Target:  5'- cCUGGagCGCGCCUCggccgucUACCUGCGa -3'
miRNA:   3'- cGACCa-GCGCGGAGaau----AUGGGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.