miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16181 3' -51.2 NC_004065.1 + 95197 0.66 0.997854
Target:  5'- -gUGGUggGGGGAUGGUACUgauuaaCCCu -3'
miRNA:   3'- uaACCGagCUCUUGCCAUGAaa----GGGu -5'
16181 3' -51.2 NC_004065.1 + 25354 0.66 0.996942
Target:  5'- uUUGaCUCGAccaagcgGAACGGUGCUauauucUCCCAg -3'
miRNA:   3'- uAACcGAGCU-------CUUGCCAUGAa-----AGGGU- -5'
16181 3' -51.2 NC_004065.1 + 174880 0.66 0.996463
Target:  5'- --gGGC-CGGGAACGGcgg-UUCCCu -3'
miRNA:   3'- uaaCCGaGCUCUUGCCaugaAAGGGu -5'
16181 3' -51.2 NC_004065.1 + 58767 0.66 0.996463
Target:  5'- --cGGCUCGAGGucauGUACaugaggUUUCCCAg -3'
miRNA:   3'- uaaCCGAGCUCUugc-CAUG------AAAGGGU- -5'
16181 3' -51.2 NC_004065.1 + 63602 0.66 0.996463
Target:  5'- --aGGCUgaCGAGcACGGUGCUgggcaUCUCGa -3'
miRNA:   3'- uaaCCGA--GCUCuUGCCAUGAa----AGGGU- -5'
16181 3' -51.2 NC_004065.1 + 225136 0.66 0.99586
Target:  5'- --gGGCUCGGGAcGCGG-ACgcUCCUc -3'
miRNA:   3'- uaaCCGAGCUCU-UGCCaUGaaAGGGu -5'
16181 3' -51.2 NC_004065.1 + 398 0.67 0.994403
Target:  5'- -aUGGCgcaCGAG-ACGGUGUUUUUCCGc -3'
miRNA:   3'- uaACCGa--GCUCuUGCCAUGAAAGGGU- -5'
16181 3' -51.2 NC_004065.1 + 173010 0.67 0.993532
Target:  5'- -aUGGCUCGAGAGCucgGGUACa------ -3'
miRNA:   3'- uaACCGAGCUCUUG---CCAUGaaagggu -5'
16181 3' -51.2 NC_004065.1 + 227039 0.67 0.991467
Target:  5'- -aUGGUUCGucggcgccAGAGaGGUcGCUUUCCCAg -3'
miRNA:   3'- uaACCGAGC--------UCUUgCCA-UGAAAGGGU- -5'
16181 3' -51.2 NC_004065.1 + 169862 0.68 0.9858
Target:  5'- --gGGUUCGGGGACGGUgACgggCUCGg -3'
miRNA:   3'- uaaCCGAGCUCUUGCCA-UGaaaGGGU- -5'
16181 3' -51.2 NC_004065.1 + 184920 0.69 0.975119
Target:  5'- -gUGGCUCGGGAGCGGccgggagACggUCUg- -3'
miRNA:   3'- uaACCGAGCUCUUGCCa------UGaaAGGgu -5'
16181 3' -51.2 NC_004065.1 + 29467 0.69 0.972421
Target:  5'- cUUGGCgaUCGAGAgcGCGGUGCUcuuggucaggcgUUCCa- -3'
miRNA:   3'- uAACCG--AGCUCU--UGCCAUGA------------AAGGgu -5'
16181 3' -51.2 NC_004065.1 + 42500 0.7 0.959513
Target:  5'- -cUGGgUCGGGAACGGUACgaacuggCCg- -3'
miRNA:   3'- uaACCgAGCUCUUGCCAUGaaa----GGgu -5'
16181 3' -51.2 NC_004065.1 + 6556 0.72 0.922516
Target:  5'- --cGGuCUCGGGAcCGGUGCUUcUCCUg -3'
miRNA:   3'- uaaCC-GAGCUCUuGCCAUGAA-AGGGu -5'
16181 3' -51.2 NC_004065.1 + 111520 0.72 0.91679
Target:  5'- --aGGCucuUCGAGAuGCGGUACUcggCCCGg -3'
miRNA:   3'- uaaCCG---AGCUCU-UGCCAUGAaa-GGGU- -5'
16181 3' -51.2 NC_004065.1 + 89107 0.74 0.854537
Target:  5'- --gGGCUCGGGAACG-UACUacgCCCGa -3'
miRNA:   3'- uaaCCGAGCUCUUGCcAUGAaa-GGGU- -5'
16181 3' -51.2 NC_004065.1 + 182850 1.07 0.015647
Target:  5'- uAUUGGCUCGAGAACGGUACUUUCCCAu -3'
miRNA:   3'- -UAACCGAGCUCUUGCCAUGAAAGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.