miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16181 5' -44.8 NC_004065.1 + 89833 0.66 1
Target:  5'- --cGGGGGAGaagGCCGUggcgUAggggcuGAGGUCc -3'
miRNA:   3'- auaCCCUUUCa--UGGCAa---AU------UUCCAGu -5'
16181 5' -44.8 NC_004065.1 + 113881 0.66 1
Target:  5'- aGUGGGGAGGUucgcggcucuuacGCCGgacgAGAGGgCGg -3'
miRNA:   3'- aUACCCUUUCA-------------UGGCaaa-UUUCCaGU- -5'
16181 5' -44.8 NC_004065.1 + 8805 0.66 0.999999
Target:  5'- -uUGGGAcuAGUuCCGUUU--GGGUCu -3'
miRNA:   3'- auACCCUu-UCAuGGCAAAuuUCCAGu -5'
16181 5' -44.8 NC_004065.1 + 202986 0.68 0.999996
Target:  5'- gGUGGGGGAGgauaAUCGggUGGAGGg-- -3'
miRNA:   3'- aUACCCUUUCa---UGGCaaAUUUCCagu -5'
16181 5' -44.8 NC_004065.1 + 166351 0.68 0.999992
Target:  5'- --cGGGAGAGUcUCGgc--GAGGUCGa -3'
miRNA:   3'- auaCCCUUUCAuGGCaaauUUCCAGU- -5'
16181 5' -44.8 NC_004065.1 + 80183 0.7 0.999928
Target:  5'- cAUGGGA---UACCGUUcuucuuGAGGUCGu -3'
miRNA:   3'- aUACCCUuucAUGGCAAau----UUCCAGU- -5'
16181 5' -44.8 NC_004065.1 + 17273 0.72 0.999328
Target:  5'- gGUGGGGAGGUGgcacUCGgg-GAAGGUUAu -3'
miRNA:   3'- aUACCCUUUCAU----GGCaaaUUUCCAGU- -5'
16181 5' -44.8 NC_004065.1 + 35412 0.72 0.999313
Target:  5'- cGUGGGAGAGUACCGggacgAcggcuucgucuucGAGGUg- -3'
miRNA:   3'- aUACCCUUUCAUGGCaaa--U-------------UUCCAgu -5'
16181 5' -44.8 NC_004065.1 + 148587 0.75 0.987872
Target:  5'- --cGGGGccuGGUGCCGgucagGAAGGUCAc -3'
miRNA:   3'- auaCCCUu--UCAUGGCaaa--UUUCCAGU- -5'
16181 5' -44.8 NC_004065.1 + 47171 0.76 0.984364
Target:  5'- aAUGGGAAAGUACCGUUcucGAGccaauacacGUCAa -3'
miRNA:   3'- aUACCCUUUCAUGGCAAau-UUC---------CAGU- -5'
16181 5' -44.8 NC_004065.1 + 182885 1.08 0.056476
Target:  5'- cUAUGGGAAAGUACCGUUUAAAGGUCAc -3'
miRNA:   3'- -AUACCCUUUCAUGGCAAAUUUCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.