miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16182 3' -48.7 NC_004065.1 + 50288 0.66 0.999808
Target:  5'- uCCCAGUGGGAuucAGUCUCa--UGACa- -3'
miRNA:   3'- uGGGUUACCUU---UCAGGGauaACUGag -5'
16182 3' -48.7 NC_004065.1 + 183023 0.66 0.999808
Target:  5'- uGCCaaUAAUGGGAAaaaCCC-AUUGACUCa -3'
miRNA:   3'- -UGG--GUUACCUUUca-GGGaUAACUGAG- -5'
16182 3' -48.7 NC_004065.1 + 182988 0.66 0.999808
Target:  5'- aACCCAAUGacucacCCCUAUUGACc- -3'
miRNA:   3'- -UGGGUUACcuuucaGGGAUAACUGag -5'
16182 3' -48.7 NC_004065.1 + 2920 0.66 0.999755
Target:  5'- cAUCCuGUGGGuacaAGGUUCCUGgcaccgGGCUCg -3'
miRNA:   3'- -UGGGuUACCU----UUCAGGGAUaa----CUGAG- -5'
16182 3' -48.7 NC_004065.1 + 61883 0.66 0.999755
Target:  5'- cGCCCAAaucGGAaucgGAGUCCUca--GACUCa -3'
miRNA:   3'- -UGGGUUa--CCU----UUCAGGGauaaCUGAG- -5'
16182 3' -48.7 NC_004065.1 + 65144 0.66 0.999755
Target:  5'- gACCCA--GGAAucGUCCCgcucgcGGCUCg -3'
miRNA:   3'- -UGGGUuaCCUUu-CAGGGauaa--CUGAG- -5'
16182 3' -48.7 NC_004065.1 + 135138 0.66 0.99969
Target:  5'- gUCCGAUGGAcacuuAGG-CUCUGUgagGGCUCu -3'
miRNA:   3'- uGGGUUACCU-----UUCaGGGAUAa--CUGAG- -5'
16182 3' -48.7 NC_004065.1 + 173166 0.68 0.99766
Target:  5'- aGCUCGGuUGGggGGUUCUUAUcGugUCg -3'
miRNA:   3'- -UGGGUU-ACCuuUCAGGGAUAaCugAG- -5'
16182 3' -48.7 NC_004065.1 + 37660 0.69 0.996717
Target:  5'- aGCCCAccaggAUGGAAuacgCCCUcgUGACa- -3'
miRNA:   3'- -UGGGU-----UACCUUuca-GGGAuaACUGag -5'
16182 3' -48.7 NC_004065.1 + 164153 0.69 0.996138
Target:  5'- cACCgaCGGUGGGcuagcaugcaugAGGUCCUUaAUUGACUCg -3'
miRNA:   3'- -UGG--GUUACCU------------UUCAGGGA-UAACUGAG- -5'
16182 3' -48.7 NC_004065.1 + 25329 0.69 0.99473
Target:  5'- uCCCAGgguccUGcGgcAGUCCCUuuUUGACUCg -3'
miRNA:   3'- uGGGUU-----AC-CuuUCAGGGAu-AACUGAG- -5'
16182 3' -48.7 NC_004065.1 + 183395 0.73 0.959885
Target:  5'- gGCuCCAAUGGGuuuuUCCC-AUUGACUCa -3'
miRNA:   3'- -UG-GGUUACCUuuc-AGGGaUAACUGAG- -5'
16182 3' -48.7 NC_004065.1 + 183117 0.79 0.762253
Target:  5'- gGCuCCAAUGGGAcuUUCCUGUUGAUUCa -3'
miRNA:   3'- -UG-GGUUACCUUucAGGGAUAACUGAG- -5'
16182 3' -48.7 NC_004065.1 + 183488 0.79 0.762253
Target:  5'- gGCuCCAAUGGGAcuUUCCUGUUGAUUCa -3'
miRNA:   3'- -UG-GGUUACCUUucAGGGAUAACUGAG- -5'
16182 3' -48.7 NC_004065.1 + 183836 0.8 0.701417
Target:  5'- cGCCCccuauGUGGAAAGUCCCUAUgGGC-Cg -3'
miRNA:   3'- -UGGGu----UACCUUUCAGGGAUAaCUGaG- -5'
16182 3' -48.7 NC_004065.1 + 183302 0.83 0.523368
Target:  5'- gGCuCCAAUGGGAcuUUCCUGUUGACUCa -3'
miRNA:   3'- -UG-GGUUACCUUucAGGGAUAACUGAG- -5'
16182 3' -48.7 NC_004065.1 + 183609 0.9 0.23708
Target:  5'- aACCCAuUGGAAAGUCCCUAUUGAUc- -3'
miRNA:   3'- -UGGGUuACCUUUCAGGGAUAACUGag -5'
16182 3' -48.7 NC_004065.1 + 183548 0.96 0.113855
Target:  5'- --aCAAUGGAAAGUCCCUAUUGACUCa -3'
miRNA:   3'- uggGUUACCUUUCAGGGAUAACUGAG- -5'
16182 3' -48.7 NC_004065.1 + 183173 0.96 0.110811
Target:  5'- aACCCAuUGGAAAGUCCCUAaUGACUCa -3'
miRNA:   3'- -UGGGUuACCUUUCAGGGAUaACUGAG- -5'
16182 3' -48.7 NC_004065.1 + 183702 0.98 0.091549
Target:  5'- aACCCAGUGGAAAGUCCCauUUGACUCa -3'
miRNA:   3'- -UGGGUUACCUUUCAGGGauAACUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.