miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16183 3' -48.8 NC_004065.1 + 129371 0.66 0.999856
Target:  5'- aACUCGAcGuGcGAGUCCCUGUUcucgccgcugccgccGACGCu -3'
miRNA:   3'- -UGGGUUaC-CuUUCAGGGAUAA---------------CUGCG- -5'
16183 3' -48.8 NC_004065.1 + 182988 0.66 0.999841
Target:  5'- aACCCAAUGacucacCCCUAUUGACc- -3'
miRNA:   3'- -UGGGUUACcuuucaGGGAUAACUGcg -5'
16183 3' -48.8 NC_004065.1 + 50288 0.66 0.999841
Target:  5'- uCCCAGUGGGAuucAGUCUCa--UGACa- -3'
miRNA:   3'- uGGGUUACCUU---UCAGGGauaACUGcg -5'
16183 3' -48.8 NC_004065.1 + 44561 0.66 0.999742
Target:  5'- cCCCGA-GG-AAGUCCuCUAgcGGCGUc -3'
miRNA:   3'- uGGGUUaCCuUUCAGG-GAUaaCUGCG- -5'
16183 3' -48.8 NC_004065.1 + 93703 0.67 0.999675
Target:  5'- gACCCAccGGc---UCCUUAUUGACGa -3'
miRNA:   3'- -UGGGUuaCCuuucAGGGAUAACUGCg -5'
16183 3' -48.8 NC_004065.1 + 150241 0.67 0.999675
Target:  5'- uGCCCAAgagGGAGAaguucuucUCCCUcgUGGUGCc -3'
miRNA:   3'- -UGGGUUa--CCUUUc-------AGGGAuaACUGCG- -5'
16183 3' -48.8 NC_004065.1 + 32855 0.67 0.999593
Target:  5'- -aCCGcgGGGAGcuggcGUCCCUGgucgagaGGCGCg -3'
miRNA:   3'- ugGGUuaCCUUU-----CAGGGAUaa-----CUGCG- -5'
16183 3' -48.8 NC_004065.1 + 65423 0.67 0.999593
Target:  5'- gAUCC--UGGAAcaacAGcgcUCCCUGUUGACGg -3'
miRNA:   3'- -UGGGuuACCUU----UC---AGGGAUAACUGCg -5'
16183 3' -48.8 NC_004065.1 + 101998 0.67 0.999493
Target:  5'- aGCUCGAgcaGGAAgaGGUCgUaGUUGGCGCg -3'
miRNA:   3'- -UGGGUUa--CCUU--UCAGgGaUAACUGCG- -5'
16183 3' -48.8 NC_004065.1 + 213732 0.67 0.999493
Target:  5'- uACCaaCGGUGGAAggaGGUCUgUGUgagggUGGCGCa -3'
miRNA:   3'- -UGG--GUUACCUU---UCAGGgAUA-----ACUGCG- -5'
16183 3' -48.8 NC_004065.1 + 1734 0.68 0.999056
Target:  5'- cACCCAAaguaccUGGAAAGg-CCgag-GACGCu -3'
miRNA:   3'- -UGGGUU------ACCUUUCagGGauaaCUGCG- -5'
16183 3' -48.8 NC_004065.1 + 176059 0.68 0.998851
Target:  5'- gGCCCGGUGGAAuuugauGUUgUUGUUGcUGCu -3'
miRNA:   3'- -UGGGUUACCUUu-----CAGgGAUAACuGCG- -5'
16183 3' -48.8 NC_004065.1 + 29592 0.68 0.998851
Target:  5'- aGCCCuccGGGGAGUCCCcgaccagAUagaUGGCGUc -3'
miRNA:   3'- -UGGGuuaCCUUUCAGGGa------UA---ACUGCG- -5'
16183 3' -48.8 NC_004065.1 + 55349 0.68 0.998851
Target:  5'- gACCCGAcGGAgaacgAGGUCCCggc-GACGa -3'
miRNA:   3'- -UGGGUUaCCU-----UUCAGGGauaaCUGCg -5'
16183 3' -48.8 NC_004065.1 + 199770 0.68 0.998
Target:  5'- uUCCAGUGGcucgucuuGAGGUUUCgggUGACGCg -3'
miRNA:   3'- uGGGUUACC--------UUUCAGGGauaACUGCG- -5'
16183 3' -48.8 NC_004065.1 + 189689 0.69 0.997618
Target:  5'- cGCCCGAUccGGGGAuGUCCCUccacGACGa -3'
miRNA:   3'- -UGGGUUA--CCUUU-CAGGGAuaa-CUGCg -5'
16183 3' -48.8 NC_004065.1 + 37660 0.69 0.997177
Target:  5'- aGCCCAccaggAUGGAAuacgCCCUcgUGACa- -3'
miRNA:   3'- -UGGGU-----UACCUUuca-GGGAuaACUGcg -5'
16183 3' -48.8 NC_004065.1 + 55417 0.69 0.996671
Target:  5'- gGCCUGAUGGGcuGUCCgg---GGCGCg -3'
miRNA:   3'- -UGGGUUACCUuuCAGGgauaaCUGCG- -5'
16183 3' -48.8 NC_004065.1 + 183488 0.7 0.992898
Target:  5'- gGCuCCAAUGGGAcuUUCCUGUUGAUuCa -3'
miRNA:   3'- -UG-GGUUACCUUucAGGGAUAACUGcG- -5'
16183 3' -48.8 NC_004065.1 + 183117 0.7 0.992898
Target:  5'- gGCuCCAAUGGGAcuUUCCUGUUGAUuCa -3'
miRNA:   3'- -UG-GGUUACCUUucAGGGAUAACUGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.