miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16184 3' -50.3 NC_004065.1 + 202152 0.66 0.999108
Target:  5'- -aCGGAGGUCcCGGCCGUCCa----- -3'
miRNA:   3'- uaGCUUUUAGuGUCGGCGGGcauugu -5'
16184 3' -50.3 NC_004065.1 + 197710 0.66 0.998913
Target:  5'- -cCGAcgccGUCGCGGCCG-CCGUGAg- -3'
miRNA:   3'- uaGCUuu--UAGUGUCGGCgGGCAUUgu -5'
16184 3' -50.3 NC_004065.1 + 178888 0.66 0.998684
Target:  5'- -cUGGAAGUCGC-GCCGCUaCGUGccGCAg -3'
miRNA:   3'- uaGCUUUUAGUGuCGGCGG-GCAU--UGU- -5'
16184 3' -50.3 NC_004065.1 + 207980 0.66 0.998684
Target:  5'- -cCGGAGGgauacCGCGGCCuGCCCGggGCc -3'
miRNA:   3'- uaGCUUUUa----GUGUCGG-CGGGCauUGu -5'
16184 3' -50.3 NC_004065.1 + 217187 0.66 0.998684
Target:  5'- cUCG-AGAUCGCagugcagcgaaAGCCGCCgGUcACAu -3'
miRNA:   3'- uAGCuUUUAGUG-----------UCGGCGGgCAuUGU- -5'
16184 3' -50.3 NC_004065.1 + 87234 0.66 0.998415
Target:  5'- cUCGAAGAUgGCcGCC-CCCGgcGCc -3'
miRNA:   3'- uAGCUUUUAgUGuCGGcGGGCauUGu -5'
16184 3' -50.3 NC_004065.1 + 67601 0.66 0.998415
Target:  5'- cUCGAGAuagCGCGG-CGUCCGUcGCAc -3'
miRNA:   3'- uAGCUUUua-GUGUCgGCGGGCAuUGU- -5'
16184 3' -50.3 NC_004065.1 + 154896 0.66 0.998415
Target:  5'- gGUCGAcGAUCGCgcgaucgaAGCCGCCggauCGUGAa- -3'
miRNA:   3'- -UAGCUuUUAGUG--------UCGGCGG----GCAUUgu -5'
16184 3' -50.3 NC_004065.1 + 114305 0.66 0.998385
Target:  5'- aGUCGGGAugcgcugauguccAUCcugGCGGCCGCCgCGaAACAg -3'
miRNA:   3'- -UAGCUUU-------------UAG---UGUCGGCGG-GCaUUGU- -5'
16184 3' -50.3 NC_004065.1 + 52152 0.66 0.9981
Target:  5'- -gCGGGccGAUCACAGCUGCuucCCG-AGCAg -3'
miRNA:   3'- uaGCUU--UUAGUGUCGGCG---GGCaUUGU- -5'
16184 3' -50.3 NC_004065.1 + 97179 0.66 0.9981
Target:  5'- -aCGGAAgaauAUUACGacucGCCGCCCGggAGCAu -3'
miRNA:   3'- uaGCUUU----UAGUGU----CGGCGGGCa-UUGU- -5'
16184 3' -50.3 NC_004065.1 + 37517 0.66 0.9981
Target:  5'- cUCGAucaacggcUCGCGGCUGUCCGagGGCAa -3'
miRNA:   3'- uAGCUuuu-----AGUGUCGGCGGGCa-UUGU- -5'
16184 3' -50.3 NC_004065.1 + 68338 0.66 0.997735
Target:  5'- -gCGGGAGcugcugcaGCAGCUGCCCGUGGa- -3'
miRNA:   3'- uaGCUUUUag------UGUCGGCGGGCAUUgu -5'
16184 3' -50.3 NC_004065.1 + 117829 0.66 0.997615
Target:  5'- cGUCGAGGGcgacaccagcggguUCACcuGUCGUCCGUGGCu -3'
miRNA:   3'- -UAGCUUUU--------------AGUGu-CGGCGGGCAUUGu -5'
16184 3' -50.3 NC_004065.1 + 92303 0.67 0.997313
Target:  5'- uUCGAGaacugGAUCGCAaCCGgUCGUGACGa -3'
miRNA:   3'- uAGCUU-----UUAGUGUcGGCgGGCAUUGU- -5'
16184 3' -50.3 NC_004065.1 + 83009 0.67 0.996828
Target:  5'- -aCGAAGAucUCGCAGUCGuCCCGgacCAg -3'
miRNA:   3'- uaGCUUUU--AGUGUCGGC-GGGCauuGU- -5'
16184 3' -50.3 NC_004065.1 + 206393 0.67 0.996828
Target:  5'- cGUCGGcccGAggC-CAGCCGCCCGUc--- -3'
miRNA:   3'- -UAGCU---UUuaGuGUCGGCGGGCAuugu -5'
16184 3' -50.3 NC_004065.1 + 176191 0.67 0.996828
Target:  5'- -gCGAAGAguuggCACGGUCGCCaaacucuGUAACGg -3'
miRNA:   3'- uaGCUUUUa----GUGUCGGCGGg------CAUUGU- -5'
16184 3' -50.3 NC_004065.1 + 176618 0.67 0.996828
Target:  5'- -aCGAGGAUgAUAGCgggCGCCCGgcGCc -3'
miRNA:   3'- uaGCUUUUAgUGUCG---GCGGGCauUGu -5'
16184 3' -50.3 NC_004065.1 + 3546 0.67 0.996272
Target:  5'- cUCGAaaGAAUCGCAGCgGCgC-UGGCAg -3'
miRNA:   3'- uAGCU--UUUAGUGUCGgCGgGcAUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.