miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16184 5' -48.2 NC_004065.1 + 75840 0.66 0.999891
Target:  5'- gAUGCGAGA-GGCGACgGCg------ -3'
miRNA:   3'- aUAUGUUCUaCCGCUGgCGaugaaag -5'
16184 5' -48.2 NC_004065.1 + 89799 0.66 0.999859
Target:  5'- gAUACGAcAUcGGCGGCCGuCUGCg--- -3'
miRNA:   3'- aUAUGUUcUA-CCGCUGGC-GAUGaaag -5'
16184 5' -48.2 NC_004065.1 + 191309 0.66 0.999859
Target:  5'- --aGCAGGAUGGUgccGGCCGCgcgugACa--- -3'
miRNA:   3'- auaUGUUCUACCG---CUGGCGa----UGaaag -5'
16184 5' -48.2 NC_004065.1 + 195014 0.66 0.999859
Target:  5'- cGUACAGGAagaaGCGGCCGC-GCUcgUCc -3'
miRNA:   3'- aUAUGUUCUac--CGCUGGCGaUGAa-AG- -5'
16184 5' -48.2 NC_004065.1 + 52591 0.66 0.999818
Target:  5'- --aGCAucggcGAUGGCGACaGCUugUcUCg -3'
miRNA:   3'- auaUGUu----CUACCGCUGgCGAugAaAG- -5'
16184 5' -48.2 NC_004065.1 + 97072 0.66 0.999818
Target:  5'- ------cGAUGGUGAUUGCUGCUg-- -3'
miRNA:   3'- auauguuCUACCGCUGGCGAUGAaag -5'
16184 5' -48.2 NC_004065.1 + 191390 0.66 0.999818
Target:  5'- cGUACAucguGAUGG-GAUCGUcgggGCUUUCg -3'
miRNA:   3'- aUAUGUu---CUACCgCUGGCGa---UGAAAG- -5'
16184 5' -48.2 NC_004065.1 + 200176 0.66 0.999818
Target:  5'- --cGCAagGGAUGGCGgauGCCGCUGa---- -3'
miRNA:   3'- auaUGU--UCUACCGC---UGGCGAUgaaag -5'
16184 5' -48.2 NC_004065.1 + 66764 0.66 0.999767
Target:  5'- --cGCGAGGaGGCGccggcgccGCCGCUGCg--- -3'
miRNA:   3'- auaUGUUCUaCCGC--------UGGCGAUGaaag -5'
16184 5' -48.2 NC_004065.1 + 173384 0.66 0.999767
Target:  5'- gGUGaAGGGUGccGCGGCCGCUGCc--- -3'
miRNA:   3'- aUAUgUUCUAC--CGCUGGCGAUGaaag -5'
16184 5' -48.2 NC_004065.1 + 195071 0.67 0.999704
Target:  5'- aGUGCAGGucgGGCGAgCGCgcgGCg--- -3'
miRNA:   3'- aUAUGUUCua-CCGCUgGCGa--UGaaag -5'
16184 5' -48.2 NC_004065.1 + 19707 0.67 0.999704
Target:  5'- --gACGGGAUGGUa--CGCUACggUCa -3'
miRNA:   3'- auaUGUUCUACCGcugGCGAUGaaAG- -5'
16184 5' -48.2 NC_004065.1 + 179285 0.67 0.999704
Target:  5'- uUAUACcuGAcaUGGaGGCCGCUGCUg-- -3'
miRNA:   3'- -AUAUGuuCU--ACCgCUGGCGAUGAaag -5'
16184 5' -48.2 NC_004065.1 + 181122 0.67 0.999627
Target:  5'- --gACGGGGUGGCGGCgGCg------ -3'
miRNA:   3'- auaUGUUCUACCGCUGgCGaugaaag -5'
16184 5' -48.2 NC_004065.1 + 187570 0.67 0.999532
Target:  5'- --cGCcAGcAUGGCGACCGCgucucgGCUg-- -3'
miRNA:   3'- auaUGuUC-UACCGCUGGCGa-----UGAaag -5'
16184 5' -48.2 NC_004065.1 + 131870 0.67 0.999417
Target:  5'- --gGCGGcGGUGGCGGCgGCgACUaUCa -3'
miRNA:   3'- auaUGUU-CUACCGCUGgCGaUGAaAG- -5'
16184 5' -48.2 NC_004065.1 + 116637 0.67 0.999417
Target:  5'- --aGCGAGGUcGGCGGCUuGUUgACUUUCu -3'
miRNA:   3'- auaUGUUCUA-CCGCUGG-CGA-UGAAAG- -5'
16184 5' -48.2 NC_004065.1 + 185169 0.68 0.999112
Target:  5'- --aGCGAGA-GGCGA-CGCUGCUc-- -3'
miRNA:   3'- auaUGUUCUaCCGCUgGCGAUGAaag -5'
16184 5' -48.2 NC_004065.1 + 6685 0.68 0.998914
Target:  5'- gGUACGuggcugguGGAcgGGUGGCCGUUACcgUUCg -3'
miRNA:   3'- aUAUGU--------UCUa-CCGCUGGCGAUGa-AAG- -5'
16184 5' -48.2 NC_004065.1 + 62395 0.68 0.998914
Target:  5'- --gGCgGGGGUGGCGGCCGCg------ -3'
miRNA:   3'- auaUG-UUCUACCGCUGGCGaugaaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.