miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16186 3' -59.2 NC_004065.1 + 228806 0.66 0.897074
Target:  5'- aGGCGuccuGCGCUCCGUcgcguucuucGCGUagcaguagUAC-CCCGGc -3'
miRNA:   3'- -CCGC----CGCGAGGCA----------UGCG--------AUGaGGGCU- -5'
16186 3' -59.2 NC_004065.1 + 52542 0.66 0.897074
Target:  5'- cGGCGGCcCcgCCGUGCGCc---CCCGc -3'
miRNA:   3'- -CCGCCGcGa-GGCAUGCGaugaGGGCu -5'
16186 3' -59.2 NC_004065.1 + 75334 0.66 0.897074
Target:  5'- cGCGGCG-UCCGUcGCGUUcguccucgACggugCCCGAg -3'
miRNA:   3'- cCGCCGCgAGGCA-UGCGA--------UGa---GGGCU- -5'
16186 3' -59.2 NC_004065.1 + 115083 0.66 0.896459
Target:  5'- cGGCGGCGCcgacugaugaugaUCaccggcgGUGCGCUugggauauccccGCUCuCCGGg -3'
miRNA:   3'- -CCGCCGCG-------------AGg------CAUGCGA------------UGAG-GGCU- -5'
16186 3' -59.2 NC_004065.1 + 28503 0.66 0.890829
Target:  5'- cGCGGaGCUCCGU-CGCaugggACUgCUGAa -3'
miRNA:   3'- cCGCCgCGAGGCAuGCGa----UGAgGGCU- -5'
16186 3' -59.2 NC_004065.1 + 112584 0.66 0.890829
Target:  5'- gGGCGGCguGCUgCGU-CGCaACgugCCCGu -3'
miRNA:   3'- -CCGCCG--CGAgGCAuGCGaUGa--GGGCu -5'
16186 3' -59.2 NC_004065.1 + 120387 0.66 0.890829
Target:  5'- -cCGGCGgaUCGggcggACGCUGCUCCUu- -3'
miRNA:   3'- ccGCCGCgaGGCa----UGCGAUGAGGGcu -5'
16186 3' -59.2 NC_004065.1 + 223911 0.66 0.886984
Target:  5'- cGGCGGCGUgaugguuccuccaucUCCGUcCGC-AUUCuCUGAc -3'
miRNA:   3'- -CCGCCGCG---------------AGGCAuGCGaUGAG-GGCU- -5'
16186 3' -59.2 NC_004065.1 + 138821 0.66 0.884381
Target:  5'- cGGCGGCGCcgaugCCGcgcACGCcgacggcGCUUCCGc -3'
miRNA:   3'- -CCGCCGCGa----GGCa--UGCGa------UGAGGGCu -5'
16186 3' -59.2 NC_004065.1 + 165115 0.66 0.877734
Target:  5'- aGGCGGCGUcCCGcccggcgacugGCGCcGCUCuucuCCGAc -3'
miRNA:   3'- -CCGCCGCGaGGCa----------UGCGaUGAG----GGCU- -5'
16186 3' -59.2 NC_004065.1 + 102410 0.66 0.877734
Target:  5'- aGCGGUGCa-CGUagaGCGCcGgUCCCGAg -3'
miRNA:   3'- cCGCCGCGagGCA---UGCGaUgAGGGCU- -5'
16186 3' -59.2 NC_004065.1 + 116590 0.66 0.877059
Target:  5'- cGGCGGgccccccggccgcCGCUCU--GCGCaGCUCCCu- -3'
miRNA:   3'- -CCGCC-------------GCGAGGcaUGCGaUGAGGGcu -5'
16186 3' -59.2 NC_004065.1 + 151628 0.66 0.870893
Target:  5'- cGGCGGCGUcCCGUuC-CU-CUCCCu- -3'
miRNA:   3'- -CCGCCGCGaGGCAuGcGAuGAGGGcu -5'
16186 3' -59.2 NC_004065.1 + 183297 0.66 0.870893
Target:  5'- cGCGuGCGCcUCGUGCGCgacCUCgCGGa -3'
miRNA:   3'- cCGC-CGCGaGGCAUGCGau-GAGgGCU- -5'
16186 3' -59.2 NC_004065.1 + 188519 0.66 0.870893
Target:  5'- uGGCGGgacCGC-CCGcGCGCUcCccgUCCCGAc -3'
miRNA:   3'- -CCGCC---GCGaGGCaUGCGAuG---AGGGCU- -5'
16186 3' -59.2 NC_004065.1 + 67350 0.66 0.870893
Target:  5'- -aUGGCGCUCCGgacGCGCggucgaGCUCuaGAc -3'
miRNA:   3'- ccGCCGCGAGGCa--UGCGa-----UGAGggCU- -5'
16186 3' -59.2 NC_004065.1 + 142500 0.66 0.870893
Target:  5'- gGGUGGCGgUCUGUcgACGgcuCUugUCCCu- -3'
miRNA:   3'- -CCGCCGCgAGGCA--UGC---GAugAGGGcu -5'
16186 3' -59.2 NC_004065.1 + 28401 0.66 0.86386
Target:  5'- cGgGGUGUUCCacgggGCGCaGCUCCUGGu -3'
miRNA:   3'- cCgCCGCGAGGca---UGCGaUGAGGGCU- -5'
16186 3' -59.2 NC_004065.1 + 126237 0.66 0.860995
Target:  5'- cGCGGCGCUCgCGgagaucaaccaGCUGCUgCgCGAc -3'
miRNA:   3'- cCGCCGCGAG-GCaug--------CGAUGAgG-GCU- -5'
16186 3' -59.2 NC_004065.1 + 173461 0.67 0.856642
Target:  5'- uGGCGGCGCUCg--ACGCcagcaCCGAa -3'
miRNA:   3'- -CCGCCGCGAGgcaUGCGaugagGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.