miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16186 5' -49.8 NC_004065.1 + 164389 0.66 0.999752
Target:  5'- --aCAAGAGCAccagcUCGaGUUC-CGCCgCCg -3'
miRNA:   3'- cgaGUUCUUGU-----AGCaCAAGuGCGG-GG- -5'
16186 5' -49.8 NC_004065.1 + 53684 0.66 0.999752
Target:  5'- -gUCAuccGAugAUCGUG-UCGcCGCCCg -3'
miRNA:   3'- cgAGUu--CUugUAGCACaAGU-GCGGGg -5'
16186 5' -49.8 NC_004065.1 + 12982 0.66 0.999752
Target:  5'- cGCUaGAGuuUAUCGUGUUCuagaACGugucCCCCa -3'
miRNA:   3'- -CGAgUUCuuGUAGCACAAG----UGC----GGGG- -5'
16186 5' -49.8 NC_004065.1 + 66072 0.66 0.999752
Target:  5'- uGCUCGAGGACcuggcgaucgaGUCGUuccugCACGCgCUg -3'
miRNA:   3'- -CGAGUUCUUG-----------UAGCAcaa--GUGCGgGG- -5'
16186 5' -49.8 NC_004065.1 + 167023 0.66 0.999752
Target:  5'- aGCUaGAGAaguucuACGUCGacgUCGgGCCCCu -3'
miRNA:   3'- -CGAgUUCU------UGUAGCacaAGUgCGGGG- -5'
16186 5' -49.8 NC_004065.1 + 2408 0.66 0.999752
Target:  5'- gGCUCGuGAAguuUCGUcUUCucgguCGCCCCg -3'
miRNA:   3'- -CGAGUuCUUgu-AGCAcAAGu----GCGGGG- -5'
16186 5' -49.8 NC_004065.1 + 128137 0.66 0.999746
Target:  5'- aGCUCGgaGGAgccgccccgGCGUCGUcgUCugcggcggcgauaGCGCCCCc -3'
miRNA:   3'- -CGAGU--UCU---------UGUAGCAcaAG-------------UGCGGGG- -5'
16186 5' -49.8 NC_004065.1 + 133434 0.66 0.999715
Target:  5'- aUUCGGGcGCGUCGgccucguucugcgauUGUUC-CGCCUCg -3'
miRNA:   3'- cGAGUUCuUGUAGC---------------ACAAGuGCGGGG- -5'
16186 5' -49.8 NC_004065.1 + 72597 0.66 0.999688
Target:  5'- cCUgGGGu-CGUaCGUGUUCGCGaUCCCg -3'
miRNA:   3'- cGAgUUCuuGUA-GCACAAGUGC-GGGG- -5'
16186 5' -49.8 NC_004065.1 + 201014 0.66 0.999688
Target:  5'- aCUCGAG-GCcgCGUGcgCgcgGCGCCUCg -3'
miRNA:   3'- cGAGUUCuUGuaGCACaaG---UGCGGGG- -5'
16186 5' -49.8 NC_004065.1 + 38572 0.66 0.999688
Target:  5'- --cCGAGAACcgaccAUCGUGUUCuCGaccaaCCCCa -3'
miRNA:   3'- cgaGUUCUUG-----UAGCACAAGuGC-----GGGG- -5'
16186 5' -49.8 NC_004065.1 + 88634 0.66 0.99961
Target:  5'- aGCUCGGGAuccACGUCGa------GCCCCg -3'
miRNA:   3'- -CGAGUUCU---UGUAGCacaagugCGGGG- -5'
16186 5' -49.8 NC_004065.1 + 14190 0.66 0.99961
Target:  5'- ---gAAGGGCGUCGUG---ACGCCuCCg -3'
miRNA:   3'- cgagUUCUUGUAGCACaagUGCGG-GG- -5'
16186 5' -49.8 NC_004065.1 + 143465 0.66 0.999516
Target:  5'- cGCUCu---GCGUCGUcgUgACGCCCg -3'
miRNA:   3'- -CGAGuucuUGUAGCAcaAgUGCGGGg -5'
16186 5' -49.8 NC_004065.1 + 81487 0.66 0.999516
Target:  5'- --gCAAGAgcuGCAUCaagcugGUGUgCACGUCCCu -3'
miRNA:   3'- cgaGUUCU---UGUAG------CACAaGUGCGGGG- -5'
16186 5' -49.8 NC_004065.1 + 44169 0.66 0.999516
Target:  5'- --cCGuGAGCAgUCGcGUcccUCACGCCCCc -3'
miRNA:   3'- cgaGUuCUUGU-AGCaCA---AGUGCGGGG- -5'
16186 5' -49.8 NC_004065.1 + 118536 0.66 0.999516
Target:  5'- cGUUCGAGGAC-UCGUucUCAuCGUCCa -3'
miRNA:   3'- -CGAGUUCUUGuAGCAcaAGU-GCGGGg -5'
16186 5' -49.8 NC_004065.1 + 121284 0.66 0.999402
Target:  5'- gGCUUgAAGAcCcgCGUGagggcgacgCGCGCCCCc -3'
miRNA:   3'- -CGAG-UUCUuGuaGCACaa-------GUGCGGGG- -5'
16186 5' -49.8 NC_004065.1 + 193110 0.66 0.999402
Target:  5'- cCUCGAGGAUGUCGUGcUCA-GUCUg -3'
miRNA:   3'- cGAGUUCUUGUAGCACaAGUgCGGGg -5'
16186 5' -49.8 NC_004065.1 + 110982 0.66 0.999402
Target:  5'- gGgUCA-GAGCGUCGUGUUgacgagCACGgCCa -3'
miRNA:   3'- -CgAGUuCUUGUAGCACAA------GUGCgGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.