miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16187 3' -54.2 NC_004065.1 + 18147 0.66 0.982269
Target:  5'- aCGGgAUGUUGgcGGuaucguccGCGGGGcGUUCu -3'
miRNA:   3'- gGCCgUACGACuuCC--------UGUCCCaCAAG- -5'
16187 3' -54.2 NC_004065.1 + 225881 0.66 0.980221
Target:  5'- uCCGGacuUGgucuucggguCUGAGGGACGGuGGUuGUUCu -3'
miRNA:   3'- -GGCCgu-AC----------GACUUCCUGUC-CCA-CAAG- -5'
16187 3' -54.2 NC_004065.1 + 110965 0.66 0.978002
Target:  5'- aCCGuGCA-GCUG-AGGACGGGucagagcgucGUGUUg -3'
miRNA:   3'- -GGC-CGUaCGACuUCCUGUCC----------CACAAg -5'
16187 3' -54.2 NC_004065.1 + 159735 0.66 0.977771
Target:  5'- -gGGUGcUGCUGAAGGccgccGCGGGGUugcgccaGUUCu -3'
miRNA:   3'- ggCCGU-ACGACUUCC-----UGUCCCA-------CAAG- -5'
16187 3' -54.2 NC_004065.1 + 156818 0.66 0.974078
Target:  5'- uUCGGCAcgaUGCUGGacaccuuggucugcgAGaACAGGG-GUUCg -3'
miRNA:   3'- -GGCCGU---ACGACU---------------UCcUGUCCCaCAAG- -5'
16187 3' -54.2 NC_004065.1 + 214196 0.66 0.973022
Target:  5'- aCGGgA-GCgGggGGAcCGGGGUGaUCa -3'
miRNA:   3'- gGCCgUaCGaCuuCCU-GUCCCACaAG- -5'
16187 3' -54.2 NC_004065.1 + 31686 0.66 0.973022
Target:  5'- cCCGGCGaGCUGAGGGGgAucuGGccGUUCc -3'
miRNA:   3'- -GGCCGUaCGACUUCCUgU---CCcaCAAG- -5'
16187 3' -54.2 NC_004065.1 + 43609 0.67 0.970247
Target:  5'- cCCGGUgagGCccaucaaGAGGACGGGGUGcuggUCg -3'
miRNA:   3'- -GGCCGua-CGac-----UUCCUGUCCCACa---AG- -5'
16187 3' -54.2 NC_004065.1 + 19756 0.67 0.970247
Target:  5'- cCCGGCAUGCUGuuGucgucgaucGAUGGGcaGUUCg -3'
miRNA:   3'- -GGCCGUACGACuuC---------CUGUCCcaCAAG- -5'
16187 3' -54.2 NC_004065.1 + 176660 0.67 0.970247
Target:  5'- uCUGGCGUGgUGGAGGACGGagagcGUcUUCu -3'
miRNA:   3'- -GGCCGUACgACUUCCUGUCc----CAcAAG- -5'
16187 3' -54.2 NC_004065.1 + 159255 0.67 0.967273
Target:  5'- uUGGcCGUGaUGuAGGGCAGGGUGg-- -3'
miRNA:   3'- gGCC-GUACgACuUCCUGUCCCACaag -5'
16187 3' -54.2 NC_004065.1 + 55414 0.67 0.964095
Target:  5'- aCCGGCcugauggGCUGuccGGGGCGcGGGUcUUCg -3'
miRNA:   3'- -GGCCGua-----CGACu--UCCUGU-CCCAcAAG- -5'
16187 3' -54.2 NC_004065.1 + 161829 0.67 0.964095
Target:  5'- aCGGaCggGCgGgcGGACGGGGacggGUUCg -3'
miRNA:   3'- gGCC-GuaCGaCuuCCUGUCCCa---CAAG- -5'
16187 3' -54.2 NC_004065.1 + 115333 0.67 0.964095
Target:  5'- gCCaGCAUGUUGGAGGugAacaaacGGaUGUUCg -3'
miRNA:   3'- -GGcCGUACGACUUCCugU------CCcACAAG- -5'
16187 3' -54.2 NC_004065.1 + 35508 0.67 0.960707
Target:  5'- aCCGGCGUcUUGGAGGcgACGGaGGUGg-- -3'
miRNA:   3'- -GGCCGUAcGACUUCC--UGUC-CCACaag -5'
16187 3' -54.2 NC_004065.1 + 112171 0.67 0.957104
Target:  5'- aCGGCggGgaGAAGGA--GGGUGUg- -3'
miRNA:   3'- gGCCGuaCgaCUUCCUguCCCACAag -5'
16187 3' -54.2 NC_004065.1 + 28381 0.68 0.953282
Target:  5'- gUCGGCGU-CUaccGGGACaccGGGGUGUUCc -3'
miRNA:   3'- -GGCCGUAcGAcu-UCCUG---UCCCACAAG- -5'
16187 3' -54.2 NC_004065.1 + 191188 0.68 0.935736
Target:  5'- gCGGCAgauguggagGCUGggGGuCGGGGaGaUCa -3'
miRNA:   3'- gGCCGUa--------CGACuuCCuGUCCCaCaAG- -5'
16187 3' -54.2 NC_004065.1 + 77998 0.69 0.925576
Target:  5'- cUCGGCGUGCgagaUGAAGaGGC-GGGUGa-- -3'
miRNA:   3'- -GGCCGUACG----ACUUC-CUGuCCCACaag -5'
16187 3' -54.2 NC_004065.1 + 209569 0.69 0.920147
Target:  5'- cCCGGCcgGCUGcuGG-CGGGcGUGcggUCa -3'
miRNA:   3'- -GGCCGuaCGACuuCCuGUCC-CACa--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.