miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16187 5' -60.8 NC_004065.1 + 163370 0.66 0.847785
Target:  5'- cCCGGugG-CUCUCCaucagcgucagcgCGUCCGCCAc -3'
miRNA:   3'- -GGCCugUaGGGGGGgaa----------GCAGGCGGU- -5'
16187 5' -60.8 NC_004065.1 + 81146 0.66 0.847042
Target:  5'- -aGGuuuCGUCCCCCUCgcccccCG-CCGCCGc -3'
miRNA:   3'- ggCCu--GUAGGGGGGGaa----GCaGGCGGU- -5'
16187 5' -60.8 NC_004065.1 + 141823 0.66 0.847042
Target:  5'- uCgGGACcUCCCCgcccccucgacUCCUUcuccuuuccCGUCCGCCGc -3'
miRNA:   3'- -GgCCUGuAGGGG-----------GGGAA---------GCAGGCGGU- -5'
16187 5' -60.8 NC_004065.1 + 86666 0.66 0.839527
Target:  5'- cCCGcGcccuCGUCCCCCCCagUGUucccucgcccugCCGCCGc -3'
miRNA:   3'- -GGC-Cu---GUAGGGGGGGaaGCA------------GGCGGU- -5'
16187 5' -60.8 NC_004065.1 + 90167 0.66 0.839527
Target:  5'- gCCGGcuccGCcgCCUCCgCCgUCGcCCGCCu -3'
miRNA:   3'- -GGCC----UGuaGGGGG-GGaAGCaGGCGGu -5'
16187 5' -60.8 NC_004065.1 + 159683 0.66 0.839527
Target:  5'- cCCGaGGCGcUCCUCgCCgccgUCG-CCGCCGa -3'
miRNA:   3'- -GGC-CUGU-AGGGGgGGa---AGCaGGCGGU- -5'
16187 5' -60.8 NC_004065.1 + 1163 0.66 0.831849
Target:  5'- gCGGugGUCCCCauugugUCGUCggCGCCGc -3'
miRNA:   3'- gGCCugUAGGGGggga--AGCAG--GCGGU- -5'
16187 5' -60.8 NC_004065.1 + 40353 0.66 0.824014
Target:  5'- aUCGGGCGuccgauUCCCUCCCgacUCGU-CGUCAu -3'
miRNA:   3'- -GGCCUGU------AGGGGGGGa--AGCAgGCGGU- -5'
16187 5' -60.8 NC_004065.1 + 143082 0.66 0.821634
Target:  5'- cUCGGAgGUCCUCUCCaccgucUUCGUuuucgacgcgcgcgCCGCCGa -3'
miRNA:   3'- -GGCCUgUAGGGGGGG------AAGCA--------------GGCGGU- -5'
16187 5' -60.8 NC_004065.1 + 67883 0.66 0.816028
Target:  5'- aCGGACcuUCCCCgUUUUCagGUCCGCUu -3'
miRNA:   3'- gGCCUGu-AGGGGgGGAAG--CAGGCGGu -5'
16187 5' -60.8 NC_004065.1 + 29198 0.66 0.811981
Target:  5'- aCCGGGuCGUCCCCgucgccccguccgauCCCcgcgccgagacgccgUCGcCCGCCAc -3'
miRNA:   3'- -GGCCU-GUAGGGG---------------GGGa--------------AGCaGGCGGU- -5'
16187 5' -60.8 NC_004065.1 + 138250 0.66 0.811167
Target:  5'- gCGGACGacgaucucuccagccUCgCCCCCgUCGcucCCGCCGu -3'
miRNA:   3'- gGCCUGU---------------AGgGGGGGaAGCa--GGCGGU- -5'
16187 5' -60.8 NC_004065.1 + 155892 0.66 0.807898
Target:  5'- cCCGGGCA-CCCgCCUCgaCGUCCucguGCCc -3'
miRNA:   3'- -GGCCUGUaGGG-GGGGaaGCAGG----CGGu -5'
16187 5' -60.8 NC_004065.1 + 181704 0.66 0.807898
Target:  5'- cCCGGcuCAUCCUcaucaucgaUCCCUUCGg-CGCCAu -3'
miRNA:   3'- -GGCCu-GUAGGG---------GGGGAAGCagGCGGU- -5'
16187 5' -60.8 NC_004065.1 + 210954 0.67 0.802953
Target:  5'- cCUGGGCgcgGUCUCCUCCUcgUCGUcacagaugugggccaCCGCCGc -3'
miRNA:   3'- -GGCCUG---UAGGGGGGGA--AGCA---------------GGCGGU- -5'
16187 5' -60.8 NC_004065.1 + 54277 0.67 0.799629
Target:  5'- aCCGGuCGUUCCUCCUcaagucuaaUCGucUCCGCCAc -3'
miRNA:   3'- -GGCCuGUAGGGGGGGa--------AGC--AGGCGGU- -5'
16187 5' -60.8 NC_004065.1 + 167635 0.67 0.799629
Target:  5'- uCCGcGGCcgCCaCCCCCg----CCGCCAc -3'
miRNA:   3'- -GGC-CUGuaGG-GGGGGaagcaGGCGGU- -5'
16187 5' -60.8 NC_004065.1 + 45129 0.67 0.798795
Target:  5'- cCCGGGCGcccgcUCCCgauccucucucguUCCCggCGUCcCGCCGc -3'
miRNA:   3'- -GGCCUGU-----AGGG-------------GGGGaaGCAG-GCGGU- -5'
16187 5' -60.8 NC_004065.1 + 162363 0.67 0.79123
Target:  5'- aCCGGGaaaaCCCCUCUUCGgacacCCGCUc -3'
miRNA:   3'- -GGCCUguagGGGGGGAAGCa----GGCGGu -5'
16187 5' -60.8 NC_004065.1 + 163231 0.67 0.79123
Target:  5'- cUCGGACGUCCgCUCauguUUCGUCgGCgCAg -3'
miRNA:   3'- -GGCCUGUAGGgGGGg---AAGCAGgCG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.