miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16188 3' -61 NC_004065.1 + 19710 0.66 0.803727
Target:  5'- cGCGGagGCGUGCGGCcauccgagAUGGggCGCGu -3'
miRNA:   3'- aCGCCggCGCGCGUUG--------UACCgaGCGC- -5'
16188 3' -61 NC_004065.1 + 192388 0.66 0.803727
Target:  5'- cUGCGGCCGUGUcCAggACGgUGGCcUGUGa -3'
miRNA:   3'- -ACGCCGGCGCGcGU--UGU-ACCGaGCGC- -5'
16188 3' -61 NC_004065.1 + 65330 0.66 0.803727
Target:  5'- gGCGGCgGCG-GCGGCAgcaGCU-GCGg -3'
miRNA:   3'- aCGCCGgCGCgCGUUGUac-CGAgCGC- -5'
16188 3' -61 NC_004065.1 + 127481 0.66 0.803727
Target:  5'- gGUGGUCGgGCGCGGCG-GGa--GCGu -3'
miRNA:   3'- aCGCCGGCgCGCGUUGUaCCgagCGC- -5'
16188 3' -61 NC_004065.1 + 118631 0.66 0.803727
Target:  5'- -cCGGCCcgguCGCGCAugAccUGGCUgGUGa -3'
miRNA:   3'- acGCCGGc---GCGCGUugU--ACCGAgCGC- -5'
16188 3' -61 NC_004065.1 + 144516 0.66 0.803727
Target:  5'- uUGCcgaaGCCgaGCGCcaGCGACAUGGCcagcaccauggUCGCGa -3'
miRNA:   3'- -ACGc---CGG--CGCG--CGUUGUACCG-----------AGCGC- -5'
16188 3' -61 NC_004065.1 + 87191 0.66 0.795247
Target:  5'- cGCGGUCGuCGCGCGACcgcaGGUacuugaaGCGg -3'
miRNA:   3'- aCGCCGGC-GCGCGUUGua--CCGag-----CGC- -5'
16188 3' -61 NC_004065.1 + 226428 0.66 0.795247
Target:  5'- gGCGGCCGUcuccaggagaguccuCGCcgaucgaGACcgGGCUCGCc -3'
miRNA:   3'- aCGCCGGCGc--------------GCG-------UUGuaCCGAGCGc -5'
16188 3' -61 NC_004065.1 + 34612 0.66 0.795247
Target:  5'- cGCGGCgGgaGCGU-ACGUguacGGCUCGCc -3'
miRNA:   3'- aCGCCGgCg-CGCGuUGUA----CCGAGCGc -5'
16188 3' -61 NC_004065.1 + 197479 0.66 0.795247
Target:  5'- gGCGGauaCCGCcgGCGCGACggGGC-CGUc -3'
miRNA:   3'- aCGCC---GGCG--CGCGUUGuaCCGaGCGc -5'
16188 3' -61 NC_004065.1 + 151531 0.66 0.795247
Target:  5'- cUGcCGGCCGgGCGguGUcgGGCgCGCu -3'
miRNA:   3'- -AC-GCCGGCgCGCguUGuaCCGaGCGc -5'
16188 3' -61 NC_004065.1 + 32673 0.66 0.794391
Target:  5'- cGCGGgCGCgguucucGCGCAGCGccuucGGgaCGCGg -3'
miRNA:   3'- aCGCCgGCG-------CGCGUUGUa----CCgaGCGC- -5'
16188 3' -61 NC_004065.1 + 186899 0.66 0.792677
Target:  5'- cGCGGCCggcggucuucgcgaGCGCGgauCGGCGccGGgUCGCGg -3'
miRNA:   3'- aCGCCGG--------------CGCGC---GUUGUa-CCgAGCGC- -5'
16188 3' -61 NC_004065.1 + 141370 0.66 0.786634
Target:  5'- gUGCuGGCgGCGCuCGACucgacggGGCUCGaCGu -3'
miRNA:   3'- -ACG-CCGgCGCGcGUUGua-----CCGAGC-GC- -5'
16188 3' -61 NC_004065.1 + 32737 0.66 0.786634
Target:  5'- gGCGG-CGuCGCGCGAgaagccgccCAUGcGCUCGUa -3'
miRNA:   3'- aCGCCgGC-GCGCGUU---------GUAC-CGAGCGc -5'
16188 3' -61 NC_004065.1 + 60117 0.66 0.786634
Target:  5'- aGCGGCCGgcCGCGU-ACA-GGCUCu-- -3'
miRNA:   3'- aCGCCGGC--GCGCGuUGUaCCGAGcgc -5'
16188 3' -61 NC_004065.1 + 29909 0.66 0.786634
Target:  5'- uUGaCGGCC-CGCGCGAaguccUcgGGCUCGa- -3'
miRNA:   3'- -AC-GCCGGcGCGCGUU-----GuaCCGAGCgc -5'
16188 3' -61 NC_004065.1 + 62098 0.66 0.786634
Target:  5'- aGCGGCaGCG-GCGGuCGUuacGCUCGCGg -3'
miRNA:   3'- aCGCCGgCGCgCGUU-GUAc--CGAGCGC- -5'
16188 3' -61 NC_004065.1 + 80653 0.66 0.781407
Target:  5'- gGCGGUCGCGaGCAACAuaucccugccgaucuUGGUgauagaaGCGg -3'
miRNA:   3'- aCGCCGGCGCgCGUUGU---------------ACCGag-----CGC- -5'
16188 3' -61 NC_004065.1 + 42643 0.66 0.777898
Target:  5'- cGC-GCCGCGCGCcAGC-UGGCaaagaUCGgGa -3'
miRNA:   3'- aCGcCGGCGCGCG-UUGuACCG-----AGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.