miRNA display CGI


Results 1 - 20 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16188 5' -51.5 NC_004065.1 + 1533 0.66 0.997972
Target:  5'- gGGCACGcaaGCCuacACGCGACGUgguguguaAGCuGACg -3'
miRNA:   3'- -CUGUGC---UGGu--UGUGCUGCG--------UUGuCUG- -5'
16188 5' -51.5 NC_004065.1 + 122294 0.66 0.997972
Target:  5'- uGCAgGACCugauCGuCGACGCGACGaACa -3'
miRNA:   3'- cUGUgCUGGuu--GU-GCUGCGUUGUcUG- -5'
16188 5' -51.5 NC_004065.1 + 148537 0.66 0.997972
Target:  5'- uGCAC-ACCAGCuuGAUGCAgcucuuGCAGAUc -3'
miRNA:   3'- cUGUGcUGGUUGugCUGCGU------UGUCUG- -5'
16188 5' -51.5 NC_004065.1 + 59684 0.66 0.997972
Target:  5'- cGACAuccCGACCAcguuCGCGGCaGCGGCAucGAUg -3'
miRNA:   3'- -CUGU---GCUGGUu---GUGCUG-CGUUGU--CUG- -5'
16188 5' -51.5 NC_004065.1 + 199461 0.66 0.997972
Target:  5'- gGACGCGAagUCGcGgACGAUGCGGCAGcCg -3'
miRNA:   3'- -CUGUGCU--GGU-UgUGCUGCGUUGUCuG- -5'
16188 5' -51.5 NC_004065.1 + 217079 0.66 0.997972
Target:  5'- cGGCACcgaaagaauaGAUCGuCGCGGCGaaCAGCAGACc -3'
miRNA:   3'- -CUGUG----------CUGGUuGUGCUGC--GUUGUCUG- -5'
16188 5' -51.5 NC_004065.1 + 106464 0.66 0.997972
Target:  5'- gGGCGuCGACCcgUACGACGagGACGcGGCg -3'
miRNA:   3'- -CUGU-GCUGGuuGUGCUGCg-UUGU-CUG- -5'
16188 5' -51.5 NC_004065.1 + 30073 0.66 0.997972
Target:  5'- aGACGgGACCGccguggcggaGCGCG-CGCugaugugucaggGACGGACg -3'
miRNA:   3'- -CUGUgCUGGU----------UGUGCuGCG------------UUGUCUG- -5'
16188 5' -51.5 NC_004065.1 + 118549 0.66 0.997972
Target:  5'- aGGCACGACguAgACGGCgGUGACAuGCa -3'
miRNA:   3'- -CUGUGCUGguUgUGCUG-CGUUGUcUG- -5'
16188 5' -51.5 NC_004065.1 + 69372 0.66 0.997972
Target:  5'- cGACAUGAugUCGAggauCACGGCGCuGGCGGAa -3'
miRNA:   3'- -CUGUGCU--GGUU----GUGCUGCG-UUGUCUg -5'
16188 5' -51.5 NC_004065.1 + 31904 0.66 0.997972
Target:  5'- aGCG-GGCCuGACGCGGCGCGucGCcGACa -3'
miRNA:   3'- cUGUgCUGG-UUGUGCUGCGU--UGuCUG- -5'
16188 5' -51.5 NC_004065.1 + 24531 0.66 0.997972
Target:  5'- --gGCGGCggCAGCgACGACGgCAGCGGAg -3'
miRNA:   3'- cugUGCUG--GUUG-UGCUGC-GUUGUCUg -5'
16188 5' -51.5 NC_004065.1 + 33040 0.66 0.997972
Target:  5'- -cUACGcACUAcguCGCgGACGCAGCGGAUg -3'
miRNA:   3'- cuGUGC-UGGUu--GUG-CUGCGUUGUCUG- -5'
16188 5' -51.5 NC_004065.1 + 149742 0.66 0.997972
Target:  5'- --aGCGGuCCAGCGCGucGCGCAGCucGCg -3'
miRNA:   3'- cugUGCU-GGUUGUGC--UGCGUUGucUG- -5'
16188 5' -51.5 NC_004065.1 + 32852 0.66 0.997972
Target:  5'- aGC-CGGuCCAGCGCGuugGCGAUGGACa -3'
miRNA:   3'- cUGuGCU-GGUUGUGCug-CGUUGUCUG- -5'
16188 5' -51.5 NC_004065.1 + 79179 0.66 0.997972
Target:  5'- cGGCACGGagGGCGCG-UGUAucggGCAGACg -3'
miRNA:   3'- -CUGUGCUggUUGUGCuGCGU----UGUCUG- -5'
16188 5' -51.5 NC_004065.1 + 137960 0.66 0.997972
Target:  5'- cGCGCGGCCcuccgaGCG-CGCGugAGAUg -3'
miRNA:   3'- cUGUGCUGGuug---UGCuGCGUugUCUG- -5'
16188 5' -51.5 NC_004065.1 + 71055 0.66 0.997972
Target:  5'- aGGCACGAUacaaGAUccugaGCGACGCGAUccuGACc -3'
miRNA:   3'- -CUGUGCUGg---UUG-----UGCUGCGUUGu--CUG- -5'
16188 5' -51.5 NC_004065.1 + 145107 0.66 0.997972
Target:  5'- -cCACGAUguuCACGaACGaCAGCAGGCa -3'
miRNA:   3'- cuGUGCUGguuGUGC-UGC-GUUGUCUG- -5'
16188 5' -51.5 NC_004065.1 + 130011 0.66 0.997972
Target:  5'- aGGCAgCGACgAGC-CGGCGauagaGAUAGACu -3'
miRNA:   3'- -CUGU-GCUGgUUGuGCUGCg----UUGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.