miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 3' -59.7 NC_004065.1 + 162239 0.66 0.904824
Target:  5'- gCCCGaCUUGGaCgaaGUCugGGCGcCCGc -3'
miRNA:   3'- -GGGCaGAGCCaGg--CAGugCCGCuGGC- -5'
16189 3' -59.7 NC_004065.1 + 111901 0.66 0.904824
Target:  5'- aCCGcaacCUC-GUCCG-CGCGGCGACg- -3'
miRNA:   3'- gGGCa---GAGcCAGGCaGUGCCGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 172158 0.66 0.904824
Target:  5'- cCCCGUC-CGcuuuUCagaaGUCugGGCGaACCGu -3'
miRNA:   3'- -GGGCAGaGCc---AGg---CAGugCCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 111381 0.66 0.904824
Target:  5'- uCCCGcUCUCaccagCCagGUCAUGcGCGACCGg -3'
miRNA:   3'- -GGGC-AGAGcca--GG--CAGUGC-CGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 102970 0.66 0.904824
Target:  5'- uUCCG-CgCGGUaguaGUCGCGGCGcCCGc -3'
miRNA:   3'- -GGGCaGaGCCAgg--CAGUGCCGCuGGC- -5'
16189 3' -59.7 NC_004065.1 + 157715 0.66 0.898971
Target:  5'- aCCGUCg-GGaccgCgGUCGCGGCGAUg- -3'
miRNA:   3'- gGGCAGagCCa---GgCAGUGCCGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 98596 0.66 0.898971
Target:  5'- gCCGUCUcuugacgcCGGUCCGcagCAUGGUuucGCCGc -3'
miRNA:   3'- gGGCAGA--------GCCAGGCa--GUGCCGc--UGGC- -5'
16189 3' -59.7 NC_004065.1 + 148999 0.66 0.898971
Target:  5'- -gCGUCUCGaGcuUCUGcUGCGGCGAUCGg -3'
miRNA:   3'- ggGCAGAGC-C--AGGCaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 190017 0.66 0.89292
Target:  5'- aCCCGUCUCGGgaaguaauagCGUUgGCGGCGguguacagacACCGu -3'
miRNA:   3'- -GGGCAGAGCCag--------GCAG-UGCCGC----------UGGC- -5'
16189 3' -59.7 NC_004065.1 + 98686 0.66 0.89292
Target:  5'- uCCCGaUCgaCGGgacCCGUCAUGGgGACg- -3'
miRNA:   3'- -GGGC-AGa-GCCa--GGCAGUGCCgCUGgc -5'
16189 3' -59.7 NC_004065.1 + 192379 0.66 0.886674
Target:  5'- uCCUGg--UGGgcUUCGUCACGGUGAUCGc -3'
miRNA:   3'- -GGGCagaGCC--AGGCAGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 110283 0.66 0.886039
Target:  5'- uCCCGUgguacucgcgcgaCcCGG-CCGUCACGGUcucgcagcucuGGCCGg -3'
miRNA:   3'- -GGGCA-------------GaGCCaGGCAGUGCCG-----------CUGGC- -5'
16189 3' -59.7 NC_004065.1 + 185191 0.66 0.886039
Target:  5'- gCCCGUgUCGcuGUCCGugUCGCGGUGGuggcgcggagaauCCGu -3'
miRNA:   3'- -GGGCAgAGC--CAGGC--AGUGCCGCU-------------GGC- -5'
16189 3' -59.7 NC_004065.1 + 161918 0.66 0.880236
Target:  5'- aCUCGUCUCGaGUcaCCGUC-CGuaGCGACuCGg -3'
miRNA:   3'- -GGGCAGAGC-CA--GGCAGuGC--CGCUG-GC- -5'
16189 3' -59.7 NC_004065.1 + 200942 0.66 0.880236
Target:  5'- cUCCGcCUCGGagCGcagggagCGCGGCGGCUc -3'
miRNA:   3'- -GGGCaGAGCCagGCa------GUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 110573 0.66 0.880236
Target:  5'- gUCCGcCagGcGUCgGUCuCGGCGACCa -3'
miRNA:   3'- -GGGCaGagC-CAGgCAGuGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 125848 0.66 0.880236
Target:  5'- aCgGUCguaucCGGcaCCGaaGCGGCGACCGa -3'
miRNA:   3'- gGgCAGa----GCCa-GGCagUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 216872 0.66 0.880236
Target:  5'- aCCgGUUUgaCGGUCguUCGCGGCGGCgCGa -3'
miRNA:   3'- -GGgCAGA--GCCAGgcAGUGCCGCUG-GC- -5'
16189 3' -59.7 NC_004065.1 + 13164 0.66 0.880236
Target:  5'- aCCGUCaaacCGGUgagaaaCCGUacaGCGGCGuCCGu -3'
miRNA:   3'- gGGCAGa---GCCA------GGCAg--UGCCGCuGGC- -5'
16189 3' -59.7 NC_004065.1 + 93787 0.66 0.879582
Target:  5'- uCCCGUCgUCGGUggaggagaccuucCCaGcCcCGGCGACUGg -3'
miRNA:   3'- -GGGCAG-AGCCA-------------GG-CaGuGCCGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.